Pediculus humanus corporis (human body louse): Phum_PHUM564470
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Entry
Phum_PHUM564470 CDS
T01223
Name
(RefSeq) CCR4-not transcription complex, putative
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
phu
Pediculus humanus corporis (human body louse)
Pathway
phu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Phum_PHUM564470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phu03019
]
Phum_PHUM564470
Messenger RNA biogenesis [BR:
phu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Phum_PHUM564470
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Phum_PHUM564470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
DUF3819
ARM_Cnot1
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
8234780
NCBI-ProteinID:
XP_002431999
UniProt:
E0W0V5
LinkDB
All DBs
AA seq
2334 aa
AA seq
DB search
MNLDSLSFTLSQITYLVANLSKKNLKHSTQELANLVLSHGLEADRHLLRCLFSHIDLSTE
GTKKTNGNSKDCLQIQLLIQECANLISKPTLISHVCYAVDNPLHHQKTLKPTPHFFGQLR
KILKLTPVQEVVFGLALVHSSNPEFQKLSVQFTRQKLPDLIGSYIDAETSSSRQQEGGLH
DTTPEVLHLILTSLTQDKFSISVETKTVFWKRLQRDFPREHVPVILAPLLYPNRPDLPME
KINQETTIMASNILENSLPDLIMEMGYNFCSSIEECKNNLINFSARDLPPGAVARVITMM
IRSHTGLGDQINLQSLQNPPNFWGNEKSDKTPNDLNHPTTWNMENFIQAVKELSPNISWR
DVVSELDNPDFLIKDRQGFNLLFSGLRLMFGVLYQPFPIELFYRKWKNTDGQYSLIMQIL
KNPDTFSFADYPYHSVTVDILKATPESDNKEITTWRSLDLIETLLYLSDRGLYSQVQELF
KFPVHHCPDVIVLGLLQIQPPLTVLRQELLTNLMPIFLGNHPNSAIILHHAWHCVNISIK
PIIMHAMAEWYLRGDNDQTRLSRILDVAQDLKALSLLLNAQSFPFVIDLACLASRRGYLK
LDKWLTDKSGEHGEPFVSACVKFLQRRCPRIMGAVKEDNIPKAAQLPHETLATMLAVLQV
CARNVSQELSDAILAMVGNCNLLINNSRQPPPGVLRHRGLDQAFNPFPTPPVDSITNLGS
SLAGMGLGMAPPSSSAFNLPASLGPLVSTPGSPSRLIGAGPSQSPFPIIPLGSALQHPVG
APQVVPTATSLVNVNTIGALARIPQPGVEKAQTPSLFGDMLQTVSKEVEEEANSYFQRIY
NHPPHPTLTIEEVLEMLKKFMESQNKREREVFHCMLKNLFEEYRFFPQYPDKELHITAQL
FGGIIERGLVPSYMILGLALRFVLDALRKPYGSKMYFFGIAALDRFKFRLKEFQKYCEHV
ANIPHFSDFPAHLIEYVEYGLQSQEPPNRPQGQVLPSAITAILQQSLGQTTTIYKTMTTT
TLTTTTTISKVTTTSSLPLRPSIANATNIDTLLVATEKEEKMTAPPDTMQDKVAFIFNNL
SQLNLQSKCDELRELVTEEYWPWMSQYLVMKRASIELNFHVLYSNFLDVLKIPEVNRMVL
RETYRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNQPILFVDIDVKSLLVEAYH
KGQQELLYVVPFVAKVLESCAKSKIFKPTNPWTMAIMNLLSELHCEPDLKLNLKFEIEVL
CKNLDIDVKKLKPSGYLKDPKQLELLEHQLSHPSKKSENQQSAPSQLQTQTASQSNVLSN
ADEITNATTVAPATSVAPTTTTPMSNIPPGPPEPRFNYMDLNVSSVSNLTPHITINSQLQ
LFQAHPHLKQLVVSAVERAVQDWIHPVVERSIKIAVSTCEYVVKQDFAVDPDESRMRIAA
HHMVRNLTAGMAMITCRDHMITSISANLKTAFANALQGATPQQRELADSVATSIAEDNME
LACAFIQKAAIEKAIPEIDKRLLSEYELRKIARNEGRRYCDSQVLTYQAERMPEQIRLKV
GGVNSQRMIVYDFFARNIPGFLPLSDRDTALFIPKPVSESHTVTAFQTSNPTQIAYQNDE
IGPLYDKLASELDLCFQNALATPGVIATANPQIAAIQSLRDALLIAKRSRDPTSALALLQ
KAVEGLLDGVPQMSNVDPDLTLRFREAHLRVLKGLQDPRMYGVQWTNKHITRCLLECREE
WRYNLEAVDCLIRSGLVNFNQLNNLLEAMRATHDPTTLTDLAPPGPLGHIHSGIMQVRQR
EYDDPQGFPEKTDFLLRDWLHVYYSTRDVGKSFNMFVHQMNYHGILKTDELITKFFRIST
QFSVDMCYRTLSEMPNSPSLVRAKCFRTFDAFGKLIALLVKHSGDSGNNSTKMNLLNKVL
GIVTGCLLLDHEVRGTEFHHLPYQRIYIILFLELNQPEPLLEAINFQVLTSYCHVMHLIR
PTKAPGFAYAWLELISHRVFIGRILALTPQQKGWNMYSQLLIDLFKFLAPFLRNAEMAKP
VTMLYKGTLRVLLVLLHDFPEFLCDYHYAFCDVIPSNCIQMRNLILSAYPRNMRLPDPFT
PNLRVEVLSEITIPPKILSNYASMITPISFKKDLDSYLKQRSPVTFLSDLRSNLQISNEP
GMSYNIPLMNALVLYVGTQAIQHIRSKGLTPNMSTIASSAHMDIFQNLGVDLDTEGRYLF
LNAIANQLRYPNIHTHYFSCTLLYLFAESNTESIQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPSYKFWNHEFVHCAPEIEKLFESVARSCMVPKQVNQQQENDIGEPLAV
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggattcgttatcatttactttgtcacaaataacttatttggtggcaaatttg
tcaaagaaaaacctaaaacatagtactcaggaactagccaatttggttttgtctcacggt
cttgaagctgatcggcatttattgcgttgcctattttcccacattgatttgagcactgag
ggaactaaaaaaaccaacggcaacagcaaagattgtcttcagattcagctgctaattcaa
gaatgtgccaatctcatatcaaaacctacattgatttctcatgtttgctatgctgtagat
aatccattacatcatcaaaagaccttaaaaccaacccctcacttttttggacaattacga
aaaattcttaagttgacaccagttcaagaagtggtatttggcttagctttagtacattct
tcaaatcctgaatttcaaaagctgtctgttcagtttactaggcaaaagttgcctgatctt
attgggtcatatattgacgccgaaacttcaagtagtagacaacaggaaggaggacttcac
gatacgacgcctgaagttttgcatttaatattaaccagtttaactcaagataaattttca
atcagtgttgaaacaaaaactgttttttggaagcgtttacaaagagacttcccgcgtgaa
cacgtgcctgtcattttagcgcctttgttatatccgaacagaccggatttgccaatggaa
aaaattaatcaagaaacaacaataatggccagtaatattttagaaaattcactgcctgat
ctcattatggagatgggatataatttttgctcttcaattgaagagtgtaaaaacaatctt
ataaattttagtgctcgagatttgcccccgggagccgttgctcgtgttataaccatgatg
attcggtctcataccggtttgggagatcaaataaatttacaaagtttacaaaatccaccc
aatttttggggtaatgaaaaaagtgataaaactccgaatgatttaaatcatcctacaaca
tggaatatggaaaattttatacaagccgttaaagagttatctccaaatatatcttggaga
gacgttgtttccgaactggataatcctgattttttgatcaaagaccggcaaggctttaac
ttattatttagtgggttacgtttaatgttcggtgttttgtatcaacctttcccgattgaa
ttgttttatcggaagtggaagaatacagatggtcagtactcattaataatgcagattttg
aagaatccggacacttttagttttgcagattatccatatcattctgtaactgtggatatt
ttaaaagctactccggaaagtgacaataaagaaatcacgacttggagatccttagatcta
attgaaacgttactctacctgtctgacagaggattatatagccaagtgcaagagttattt
aaatttccagttcatcattgccctgatgtcatagtacttggcttattgcaaattcagcct
cctctaaccgttttaaggcaagaattacttactaatctaatgccaatatttttgggaaat
catccaaattcagctattatacttcaccatgcatggcattgtgtcaacatttcaattaaa
cctattattatgcacgcgatggctgagtggtacctaagaggagacaacgatcaaactcga
ctgtcacgaattttagatgtagctcaagatctcaaggctctatctttactattaaatgcc
caatcatttccttttgtgattgacttagcctgtttggcatctcgaaggggatatttaaaa
ttagataaatggcttaccgacaaaagtggagaacatggtgaaccttttgtatccgcctgt
gtgaaattcctgcaaagacgttgcccgcgcatcatgggagctgtaaaagaagataacatc
ccgaaagcagctcaacttcctcatgaaactcttgcaactatgcttgctgttctccaagtt
tgtgctcgaaacgtatcgcaagagttgtcagatgccatcctggcaatggttggaaactgt
aatcttttgattaataattcaaggcaacctcctcctggagtgttgaggcatcgtggtttg
gatcaagctttcaatccatttcctactccaccagttgattctataacaaatttgggaagc
agtttggctggaatgggacttggaatggcgcctcctagcagttcggcttttaatttgcca
gctagcttgggacctttagtgtcgacaccaggatctccttccagattgattggtgctgga
ccgtcacaaagtccctttcctatcatacctttaggatctgctcttcagcatccagtaggt
gctccacaagtggtacccactgctacgtcacttgtaaatgttaataccattggagccctt
gctcgtatacctcagccgggagtcgaaaaagctcaaacacccagcctttttggagacatg
ctgcaaaccgtgtctaaagaagtagaagaagaagctaacagttattttcagagaatatat
aatcatccacctcatcctactcttacaatcgaagaagtattagaaatgcttaaaaaattt
atggagtctcagaataagagagaaagagaagtatttcattgtatgttgaaaaacctattc
gaggaatacagatttttccctcaatatccagataaagaattacatattaccgctcaattg
ttcggaggcattattgaaagaggtttggtacctagctacatgattttgggtcttgctcta
agatttgtcttagatgctcttcgcaagccttacggaagtaaaatgtattttttcgggatt
gccgctctcgacagatttaaatttcgtttgaaagaatttcaaaaatattgtgaacacgtt
gctaacatccctcattttagtgattttccagcgcatttgattgagtatgtagagtacgga
ctgcaatcgcaagagcctccgaaccgaccacaaggtcaagttttaccttctgctattacg
gcaattttgcagcaaagtttaggacaaacaactaccatttataaaaccatgacaaccact
actctgactacaactaccactattagtaaagtgactaccacgtcgtctctacctcttcgt
ccatccatagcaaacgctacaaatatagatacactcctggttgcgaccgaaaaagaagaa
aaaatgaccgctccacctgataccatgcaggataaagttgcgttcatattcaacaattta
agtcaattgaatttacaatcgaaatgcgacgaattgcgagaacttgtgacagaagaatac
tggccttggatgtctcagtacctcgtcatgaaacgagccagcatcgagttaaattttcac
gtattgtactctaattttctggacgtcttgaaaattccagaagtgaatcgtatggtgtta
cgcgagacgtaccgaaacataaaagtattgttgcgtagcgacaaaggcatagctaacttt
tccgacaggtcgcttttaaaaaatttgggacattggttaggaatgttaacattgggtcga
aatcaacctattttatttgttgatatcgatgtgaaaagtttactcgtcgaagcctatcac
aagggtcaacaagaattgctttacgtcgttccttttgtggcaaaagttttagaatcatgc
gcgaaaagcaaaattttcaagccgacaaatccttggacaatggcaattatgaacttattg
tcggaacttcattgcgaacccgatttaaaattgaacttgaaatttgaaattgaagtttta
tgtaaaaatttggatatagacgttaaaaaattaaaaccctcgggatatttgaaggatcca
aaacaactggaacttttggagcaccaattaagtcatccgagcaaaaaatcagaaaatcaa
caaagtgctccatcgcaactgcagacacaaactgcttctcagagtaacgtattatcgaat
gctgatgaaatcacaaatgcaaccactgtggcgccagcaacttcggtggcaccaacaacg
acgacccccatgtcaaatatccctcccggaccaccagaacctcgttttaattacatggat
ttgaatgtgtctagcgtttctaatttaactcctcatatcaccataaacagccaattacag
ttatttcaagctcaccctcacttgaagcaactcgtcgttagtgccgtcgagagagctgtg
caagattggattcatccggtggtagaacgctcgataaaaattgccgtctccacttgcgaa
tatgttgtaaaacaagattttgcggttgatccagacgaatcacgtatgcgaattgctgcc
catcacatggttcgaaatttgaccgcgggcatggctatgattacctgtagagatcacatg
ataacttcaataagtgcaaatttgaaaactgcttttgctaacgccttgcaaggtgccact
cctcagcaacgtgaattggcagattcggttgcgactagcattgccgaagacaatatggaa
ttggcttgtgcttttatacaaaaggccgccattgaaaaagccattcccgaaattgataaa
agattgttgtcggaatacgaattacgtaaaatagcgagaaacgaaggtagaagatattgc
gattctcaagttcttacatatcaagctgaaagaatgcccgaacaaattcgacttaaagta
ggaggagttaatagtcaaagaatgattgtttatgatttttttgctcgaaatattcctgga
tttttgccactgtcagatagagatactgctttgttcataccgaaacctgtttccgaatct
catacggttacggcctttcaaacaagtaatccgactcaaatcgcgtatcaaaacgatgaa
atcggtcctctgtatgataaattagcgtcagagttagatttatgtttccaaaatgctttg
gcaacccccggagtcatagctaccgctaatcctcaaatagcagcaatacaaagtttaaga
gatgccttactcattgcaaaaaggtctagagacccaacttcggctttggcattacttcaa
aaagccgtcgaaggtctcctagacggagttcctcaaatgtcaaacgttgatcccgatctt
acattacgattcagagaagctcatctccgagttctcaaaggtcttcaagatcccagaatg
tacggagttcaatggactaataagcacataacgagatgtttgctcgaatgcagagaagaa
tggcgttacaatttagaagctgtagattgtttgatccgttctggtttggtcaattttaat
caacttaataatttacttgaagccatgagagcaactcacgatccgacgacattaaccgat
ttggctcctcccggaccgttgggtcacattcattctggaattatgcaagttcgacaaagg
gaatacgacgatcctcaaggatttcctgaaaaaactgatttcttgttaagggattggtta
cacgtttactacagtactcgtgacgtaggaaagtcttttaacatgttcgtgcatcagatg
aattaccatggaatattgaaaacggatgaattgataacaaaatttttccgaatttccacg
caattttccgtcgacatgtgttaccgaacgctgagtgaaatgcccaattctccgagtttg
gttcgagccaagtgctttcgcacgtttgatgcttttggcaaattgattgctttactagtc
aaacacagcggagattctggaaacaacagcacaaaaatgaatttattaaacaaagtattg
ggaatcgtgaccgggtgtttgctgttggatcacgaagttcgcggtaccgaattccatcat
ttaccctaccaaagaatttacataatattgttcctcgaattgaatcaacccgagcctttg
ttagaggctatcaattttcaggttttgacatcttattgtcacgtgatgcacttaataaga
cctacaaaagctccaggttttgcgtacgcatggttggaattgatttctcacagagttttt
atcggacgaatattagctcttacccctcagcaaaagggttggaacatgtattcgcaactt
ttgattgatttgttcaaattcttggctccgtttttgagaaatgcggaaatggcaaaaccc
gtcaccatgttgtacaaaggaactttacgagtccttttggtacttttacacgatttccca
gagtttctttgcgattaccactacgctttttgcgacgtgataccatctaattgcattcag
atgagaaatttgattttgtccgcttatcctcgaaacatgagattacccgatccgttcact
cccaatttaagagtggaagttttgtccgaaataacgataccgccaaagatactatccaat
tacgcatccatgatcactccgatttcatttaaaaaagatcttgattcgtacctgaaacag
cggtcgcctgttacctttttatctgatctcagaagcaatttgcaaatatctaacgaacca
ggaatgagttacaatattccactgatgaacgctttggttctctacgtgggaactcaagcg
attcaacacattcggagcaaaggtttgacaccaaacatgtcgacgatcgcaagttcggct
cacatggatattttccagaatttaggagttgatttggatactgaagggagatatttgttt
ttaaatgcgattgctaatcagcttcgatatccgaatattcatacgcattatttcagttgt
acactattgtatctttttgcggagtcaaacacggagtcgattcaagagcaaataacgagg
gttttattagaaagactcattgtgaatcgtcctcatccctggggactcttgatcactttt
atcgaactcattaaaaacccgagttataaattttggaaccacgaatttgtacactgcgct
ccagaaattgaaaagttattcgaatctgtcgccaggtcttgtatggttccaaaacaagtg
aatcaacaacaagaaaacgacattggcgaacctctggccgtatga
DBGET
integrated database retrieval system
