Pediculus humanus corporis (human body louse): Phum_PHUM597330
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Entry
Phum_PHUM597330 CDS
T01223
Name
(RefSeq) DEAD box ATP-dependent RNA helicase, putative
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
phu
Pediculus humanus corporis (human body louse)
Pathway
phu03013
Nucleocytoplasmic transport
phu03015
mRNA surveillance pathway
phu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Phum_PHUM597330
09122 Translation
03013 Nucleocytoplasmic transport
Phum_PHUM597330
03015 mRNA surveillance pathway
Phum_PHUM597330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phu03019
]
Phum_PHUM597330
03041 Spliceosome [BR:
phu03041
]
Phum_PHUM597330
03009 Ribosome biogenesis [BR:
phu03009
]
Phum_PHUM597330
03012 Translation factors [BR:
phu03012
]
Phum_PHUM597330
Enzymes [BR:
phu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Phum_PHUM597330
Messenger RNA biogenesis [BR:
phu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Phum_PHUM597330
mRNA cycle factors
Stress granule specific factors
Phum_PHUM597330
Spliceosome [BR:
phu03041
]
Complex C
Other components
EJC/TREX
Phum_PHUM597330
Ribosome biogenesis [BR:
phu03009
]
Eukaryotic type
90S particles
Helicases
Phum_PHUM597330
Translation factors [BR:
phu03012
]
Eukaryotic type
Initiation factors
eIF-4
Phum_PHUM597330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
AAA_22
UvrD-helicase
AAA_30
Motif
Other DBs
NCBI-GeneID:
8236829
NCBI-ProteinID:
XP_002432694
UniProt:
E0W2V0
LinkDB
All DBs
AA seq
407 aa
AA seq
DB search
MADVRYVVKNQSNSATEDLSLVEFETSEDVEVIPTFDRMGLREELLRGIYAYGFEKPSAI
QQRSIKPIVKGRDVIAQAQSGTGKTATFSISIIQSLDTTVRETQVLCLSPTRELAVQIQK
VILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVISGTPGRVFDMIRRRVLRTRFIKML
VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRD
ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTV
SCMHGDMPQKERDAIMKEFRTGLSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaggtatgtggtgaagaatcagtctaattcggctaccgaggatttatcg
cttgtggagttcgaaacgagtgaagatgtcgaagtcattccaacatttgatagaatgggc
ctcagagaggaacttttacgaggtatttatgcctacggatttgaaaaaccatcggcaata
caacagcgttccataaaacccattgtgaagggacgcgacgtgatcgcacaagcacaatcg
ggtactggtaaaactgctacgttttcaatatctataattcaatcactcgacacgaccgtt
agagaaacgcaagtactctgtttgtcacccacaagagaattggctgttcaaattcaaaaa
gttatacttgcattgggagatttcatgaacgttcaatgccatgcttgcattggtggtacg
aatttaggagaagatataagaaaactagattacggtcaacacgtcatttctggtactcct
ggaagagtttttgacatgattcgtcgtagagtactacgtacgagatttatcaaaatgttg
gtgttggatgaagctgatgaaatgttaaacaaaggattcaaagagcaaatatatgatgtg
tacagatacttacctcctgcgactcaagttgttttaatatctgccacattgccacatgaa
atattggaaatgacatcaaaatttatgacggatccaattagaatccttgtcaaacgtgat
gaattgactcttgaaggtataaaacaattttttgtcgctgtcgaaagagaagagtggaaa
tttgatacactttgcgacttgtacgatacattgacaataactcaagctgttatattttgc
aacacgaaaagaaaggttgattggcttactgaaaaaatgagagaagcaaattttacagtt
tcttgcatgcacggtgacatgcctcaaaaggaaagagatgcaattatgaaagaatttaga
actggtttgagcagagtactcatcacaacagatgtttgggcaagaggaattgatgttcaa
caggtgtctctggttataaattacgatttgccaaacaacagagaattgtacattcataga
attggtagatcgggtagattcggtagaaaaggtgtcgccataaattttgtcaaaagtgac
gacatcaggatattgagagacatcgaacagtattattccacgcaaatcgacgaaatgccc
atgaacgttgccgatttaatttaa
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