Primulina huaijiensis: 140956877
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Entry
140956877 CDS
T11038
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
phua Primulina huaijiensis
Pathway
phua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140956877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140956877
03041 Spliceosome [BR:
phua03041
]
140956877
03009 Ribosome biogenesis [BR:
phua03009
]
140956877
03016 Transfer RNA biogenesis [BR:
phua03016
]
140956877
Enzymes [BR:
phua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140956877
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140956877
Spliceosome [BR:
phua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140956877
Complex C
U4/U6.U5 tri-SnRNP related factors
140956877
Ribosome biogenesis [BR:
phua03009
]
Eukaryotic type
Pre-60S particles
Helicases
140956877
Transfer RNA biogenesis [BR:
phua03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140956877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
140956877
NCBI-ProteinID:
XP_073269885
LinkDB
All DBs
Position
14:complement(17971881..17984397)
Genome browser
AA seq
997 aa
AA seq
DB search
MGSVKRKSLEAAESEDDEAPTKKQQQENGLMKTIDEPVACQHDVSYPEGYLPRKALNSGS
IDIENSKPAKEFPFTLDPFQLEAIKCLDNGESVLVSAHTSAGKTVVALYAIAMSLQHKQR
VIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVIR
EVAWTIFDEVHYMRDRERGVVWEESIVMAPKKSRFVFLSATVPNAKEFADWVAKVHQQPC
HIVYTDYRPTPLQHYIFPSGSDGLYLVVDEKGKFREDSFQKALNALVPINEERKKDNGNR
HKGLVGGKAGEDSDIFKMVKMIIMRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVN
IEIIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV
DENLEPSTAKLMLKGSADPLNSAFHLNYNMLLNQIRSEDGDPETLLRNSFYQFQADRAIP
DLEKQAKVLEKERESMIIEGEDSLEDYYSLLEQYKTLKKDVRDIVLLPKHCLPFLQPGRL
VCIQCTKNDENSSSFSVKDDVTWGVMINFVRIKEVSEEDANKKPEDSSYMVDVLTRCRMQ
KDELAKKTVRIIPIKEPGEPAVVSIPLSQIDCLSSIRIVIPNDLLPVKARENTLKKVSEV
LNRFVKEGTPLLDPEDDMKVQSSSYRKAARRIEMLENLFEKHEIAKSPLVEQKLKVLHTK
KELTAKIKSIKRMIRSSSVLAFKGELKARKRVLRRMGYITSDDVVELKGKVACEISSADE
LTLTELMFNGVLKDVKVEEMISLLSCFVWREKLQEAQKPRDELEMLFMQLQDTARKVAKV
QLECKVQIDVDSFVSSFRPDVMEAVYAWAKGSKFYEIMEISQVFEGSLIRAIRRLEEVLQ
QLIQAAKSIGETELEVKFEEAVTKIKRDIVFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagaggaagtcgttggaagcggcggagagcgaggatgacgaggctccg
acgaaaaagcagcagcaagagaatggtttgatgaagacaattgatgagccagtggcatgc
cagcatgatgtctcttatccagaggggtatttgcctcggaaagctttgaattcaggttcg
atagacatagaaaactcgaagcctgccaaagagttcccgtttaccctcgacccgtttcag
ttggaagcaatcaaatgtttagacaatggcgaatctgtcctggtgtctgcacatacatct
gcgggaaagactgttgtggcattgtacgcgattgcgatgtcattacagcacaagcaacgc
gtgatatatacgtccccaattaaggctctcagtaatcagaagtacagagagttcaaagaa
gagttttcggatgtggggttgatgacaggtgatgtcactattgatcccaatgcttcctgc
ttggtgatgactacagagatctggcgaagcatgcagtacaaaggatctgaggttataagg
gaggtagcatggacaattttcgatgaggtgcattacatgagagacagggagagaggtgta
gtgtgggaagagagcatcgttatggccccaaagaaatcccggtttgtgtttctctcagct
acagttcccaatgcgaaggaatttgctgattgggttgcgaaggtgcaccaacaaccatgt
catattgtttacacggattataggcctacaccgcttcaacattacatattcccttctgga
agtgatggtctttatttggtggtcgatgaaaaaggaaagtttcgcgaggacagctttcag
aaagctctaaatgcactagttcctattaatgaagaacgaaagaaggataatgggaatcgg
cataagggtttagttggtggaaaagctggcgaggatagtgacatatttaaaatggtgaaa
atgattatcatgcgccagtatgatcctgtcatatgtttcagtttcagcaaaagagagtgt
gaatttcttgcaatgcagatggcaaaaatggatctgaacaatgatgatgagaaggtgaat
attgaaattatattttggagtgctatggatatgctatctgatgatgataaaaagctgcca
caggtctcgaacatgcttcccttattgaaaagaggaataggtgtgcatcattctggtttg
cttcccatattgaaggaagttattgaaattctattccaggaaggattcatcaagtgtttg
tttgcgacagagaccttcagcatagggctgaacatgcctgccaaaactgttgtcttcacg
aatgtccgcaaatttgatggagataaatttaggtggatatctagtggggaatacatacaa
atgagtggtcgtgctggtcgccgtggaattgatgaacgtggaatctgtatcctaatggtt
gatgagaatctagaaccttctacagctaagctgatgttaaaaggaagtgctgatcctttg
aacagtgcattccacttgaactacaatatgttattgaatcaaatccgaagtgaagatggt
gatcctgagactttgctccgtaattctttctatcaatttcaagctgaccgagccattcct
gatcttgaaaaacaagcaaaagtccttgaaaaggagagggagtcgatgataatagaaggg
gaagatagcttggaggattattactctttgctagagcaatataaaaccttgaaaaaggat
gtccgtgacatagtgctcttgccaaaacactgcttacccttcctgcagcctggcaggctt
gtgtgcatccaatgtacaaagaatgatgagaattcatcttctttttctgtcaaggatgac
gtgacttggggagtcatgattaattttgtgaggattaaagaagtttctgaagaggatgca
aataagaagcctgaagactcgagctatatggtggatgttctcacaagatgtcgtatgcag
aaggatgaacttgctaaaaaaacagtcaggatcattccaattaaggagcctggcgagcct
gctgttgtttcaattcccctttcacagattgattgcttgagtagtatccgaatagtaata
ccaaacgacctactgccagttaaggctcgagaaaatacactgaagaaagtgtctgaagtt
ctcaatagatttgtgaaagaaggcacgcctctcctagatcctgaagatgacatgaaggtt
caaagcagctcttataggaaggcagcacgtagaatagaaatgttggagaacctttttgaa
aagcatgaaattgccaaatctccactggttgagcaaaagctaaaagttctgcacacaaag
aaagaacttactgccaaaatcaaatctataaagagaatgattcggtcttcttcagtatta
gcattcaaaggtgaacttaaagcaaggaaaagagtactgaggagaatgggatatattacg
agtgatgatgttgtggagctgaagggcaaagttgcatgtgaaatcagcagcgcagatgaa
ttgacactgacggaacttatgttcaatggggttctgaaggatgttaaggtggaggagatg
atatctcttctttcgtgttttgtgtggcgagaaaagctacaggaagcccaaaagcctcga
gatgaacttgagatgcttttcatgcaattacaggatacagcacgtaaagttgccaaggtt
cagctcgagtgcaaggttcaaatcgatgttgatagttttgtgagttctttcagaccagat
gttatggaggcggtttatgcttgggcaaaaggatccaaattctatgaaattatggaaata
tcacaggtgtttgagggaagcttgatcagggctatcaggaggttggaggaagtccttcag
cagctgattcaagcagctaaatcaattggagaaacagagcttgaagtaaaatttgaagaa
gctgtcaccaagatcaagagagatattgtctttgcagcatcattgtatttgtag
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