KEGG   Primulina huaijiensis: 140959139
Entry
140959139         CDS       T11038                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
phua  Primulina huaijiensis
Pathway
phua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:phua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140959139
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phua03041]
    140959139
Spliceosome [BR:phua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    140959139
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 PRP4 Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_SCAP WD40_RFWD3 WD40_like
Other DBs
NCBI-GeneID: 140959139
NCBI-ProteinID: XP_073273025
LinkDB
Position
15:5666772..5670479
AA seq 576 aa
MDSDDKSTVSTSFTEASAPASDDEMVVSAMDTTSLRPAQPVIAPTILTPGFPPIAPIPVV
PLPIPRSLAPLPARPTVIRPPLGQNGDSKASDSDSDQDESGYIRPPTGSNHEYEISEESR
QVRERQEKVMQELLMKRHAAAMTVPTNDGAVRTRLRRLGEPITLFGEREMERRDRLRALM
AKLDSEGQLEMLMKAHEDEEAAAMMAPSKPDEDIQYPFYTEGSQALLEARKEIAKYSIVK
AALRLHRSRKKRDDPDEDLDAEIDWSLKQAEKLVLDSSEIGDDRPLSGCSISHDGKMLAT
CSLSGVAKLWTMPEVNKVSALKGHSERATDVAFSPINYQLATASADRTARLWNPEGAVLR
IFEGHLDRLARIEFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLSFHYDG
SLAASCGLDSLARVWDLRSGRSILALEGHVKPVLGLSFSPNGYHLATGGEDNTCRIWDLR
KRKSLYIIPAHSNLISQVKFEPQDGYFLVTASYDMTAKVWSSRDFKPVKTLSGHESKVTS
LDIVGDGQCIATVSHDRTIKLWTSKESEKEKAMEVD
NT seq 1731 nt   +upstreamnt  +downstreamnt
atggactctgatgacaaaagtacagtctctacttcgtttactgaggcttcagctccagct
tctgacgatgaaatggttgtttctgcaatggatacaacttctcttcgaccagcacaaccg
gtaattgcacccaccatcttaaccccgggctttcctcctatcgccccaatacctgttgtg
cctctcccaattcctcggtcattagcgccactgcccgcccgccctactgtcattagaccg
cctttaggccagaatggagactcaaaagctagtgattcagattctgatcaagatgagtct
ggatatattcgtcctcccacgggatcaaatcatgagtatgaaatctctgaagaaagcagg
caggttagagagaggcaagagaaagtgatgcaggaacttttgatgaagcgtcacgcggct
gctatgacagttccaaccaatgatggagctgttcgaacccgactccgacggcttggtgaa
cctataactctctttggggaaagggagatggagagacgtgaccgtttgagggcacttatg
gcaaaacttgattctgaaggccagctggaaatgctgatgaaagcacatgaggatgaagaa
gctgcagccatgatggcaccatccaaaccagatgaagatattcagtatcccttttacacc
gaaggttcacaagcacttttagaggcccgtaaagaaattgcaaaatattcgatagttaaa
gctgctttgcgccttcatcgttcaaggaagaaaagggatgatcctgacgaggatttggat
gctgagatagattggtctttgaaacaggcagaaaagttggtcttggattccagtgagata
ggtgatgatcggcctctttctggatgctcaatttcacacgacgggaagatgcttgccacc
tgttctttaagtggggttgcaaagttatggaccatgcccgaagtgaataaggtttctgca
ctaaagggccactcagaaagagctacagatgttgcattctctccaataaactatcaattg
gctaccgcctctgctgataggaccgcaagattatggaatccagagggtgcagttctgaga
atatttgaaggtcatttggatcgtcttgctcgtatcgaattccatccatctggaaagtac
ttgggcacagctagttttgacaaaacttggagattatgggatgtggagactggtgaggag
ttgcttcttcaagaaggccatagcaggagtgtgtatggattgtcttttcactatgatggc
tcattagcagcatcttgtggactggattctcttgctcgagtgtgggacctaaggtctggg
aggagcattcttgctctggaaggccatgtcaagccagttcttggcctcagtttttctccc
aacggttatcatttagctactggtggggaagataacacatgccgaatatgggatctgagg
aaaagaaaatctttgtacattatacctgctcattctaaccttatttctcaagtcaaattt
gaacctcaggatggatactttttagttactgcttcatatgacatgactgctaaggtctgg
tcctcgagagatttcaagcctgtgaagactttgtctggtcatgaatcaaaagtcacctcg
cttgatattgtgggagatggacagtgtattgcgactgtttcacatgatcgaactatcaaa
ttatggacaagtaaagaaagtgagaaagagaaggcaatggaagttgactga

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