Primulina huaijiensis: 140962111
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Entry
140962111 CDS
T11038
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
phua Primulina huaijiensis
Pathway
phua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140962111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phua03021
]
140962111
03019 Messenger RNA biogenesis [BR:
phua03019
]
140962111
Transcription machinery [BR:
phua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140962111
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
140962111
U7-dependent histone pre-mRNA processing factors
140962111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Adaptin_N
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
140962111
NCBI-ProteinID:
XP_073277074
LinkDB
All DBs
Position
16:17198251..17210006
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AA seq
1331 aa
AA seq
DB search
MVGKRTGSISRAKISGRINSVKYGGSGDIASKLNQLRRLREELCGADSVLLEEFLYPLLD
LLSDSFSPVRKSITEIVGQIGSKHSEFLPEIVPALINILKDDAPAVARQAITCAIDIFRC
TLIKVVIQGLYSSEFDESLKSSWEYVLKLRDEIYSLAFKVGSDGRRLPALKFVESVVLLY
SPDPNGSLEPSSDQVSEEEFNVSWLRGGHPILNVGDLSLEASKSVGKLLDQLRLPAVKSV
SNLMIIVLIKSLSTVARKRPAFYGRILPVLLGLDPSVSASEDFHISGSRHALKNAFECCL
NCTHPGAVPWRDRLLSALSEMELGKSSEQEWNLMRENNGTIDLKDDSHISQTHEDGKSSD
GALAVEQSYAGRKRPGLHDGSDFNQDNMSGKRVKSTVGVIDGSVHDPKGNQVNVPSVGRA
SSITAAESGPVPQLVAMFSTLVAQGEKAAASLEILISSISADLLADVVMANIRNLPPIYP
KSEGDEVPLLDIGPPPGVEHDAHIKNLSLLLTEILSHPSSSQLKEDKTGSHHHSGLRELE
HAQEEEVTQATVGDGNVAYDGLDFSSQQASVSTVESGSREDIPSGIHTGHSAIKSEVTDA
KLQEEEIPGLSLSIQDGRIDENLTALLSNSTNLEDANNDKATNFGNSPVELAQSLSTDRS
EELSPKVAVTDSTSINSSTPTSLGMIAQLVFPKITAPVIVLVDEQKDQLQELAFLRIIDA
YKQVTAAGGWQLRVSILAHSGIEFPSELDPWKLLKMHIFSDYVKHEGHEITLRVLYRLFG
EAEEDRDFFSSTTATSVYETFLLHVSETLRDSFPASDKSLNRLLGEVPYLPNSIFKLLEC
LCSPGCNADDKELHGGDRVIQGLSIVWSLILLRPPIRDATLKIALKSSVHHLEEVSMKAI
RLVANKLYPLSFISEKIEDFAKEMLLSVANDNQTVVTNEADVMQLLMDEKISSENQPTGA
KINNIADDTQHVATSASGQSSAVAEVQRCMSLFFALCTKKHSLIRQIFDVYKSMSEVAKQ
AVHHQLPLLVRTIGSSHELLDIMSDFPSGSEELLIQAVHTLTDGTIPSPELLATIRRLYD
TKIKDVDILIPILPFLPKNEVMRIFPYLVNAPPDKFQVALSRVIQGLNNSGPVLTPAESL
IAIHGIDPERDGIPLKKVTDACNVCFEQRDIFSQQVLAKVLNQLVEQIPLPLLFMRTVLQ
AIGAFPSLVEFIMEILSRLVSKQIWKYPKLWVGFMKCALLTKPQSFGVLLQLPPAQLENA
LNRTPALKSPLVAHANQPHIRSSLPRSSLVVLGIASDAQASSQPKPTQSQSVENGNSNKE
AVTDVSKESST
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcaaaaggacgggttcgatttcgcgagcgaagatttcgggtcgaataaattca
gtaaagtacggcggttccggggacattgcatcgaagctcaaccagctgcggcggctccga
gaggagctgtgtggcgcggactctgttttgttggaggaattcctctaccctctccttgac
ctcctttctgatagtttcagccccgttcggaaatccatcactgagatagttggccaaatt
ggatcgaagcactcagagttcttgcctgaaattgtaccagcactgataaatattctgaag
gatgatgcacctgctgttgctcgccaggctatcacatgtgcgattgatatatttcggtgt
actctcatcaaagttgtgatccagggcttgtactcaagtgagtttgatgaatcacttaaa
tcatcttgggaatatgtactaaagttaagagatgagatatactcattggcgtttaaggtg
ggaagtgatgggagaaggttgcccgcattaaagtttgtcgaatcagttgttttactttac
tcacctgaccctaatggttctttggaaccttcctctgatcaagtttctgaagaggaattc
aatgtctcgtggcttcgtggaggtcatcctatacttaatgttggagatctgtcacttgaa
gcaagtaaaagtgtgggtaaactgcttgatcaactgagactccctgctgtgaaatcagtt
agtaatctaatgattatcgtactgatcaaaagtctttcaacagttgcaaggaaaaggcca
gccttttatggtcgaatattgccagttttactcggtttggatccttcagtctctgctagc
gaagactttcatatttctgggtcacgtcatgctttgaagaatgcttttgaatgttgtttg
aattgtacacaccctggtgctgttccgtggcgggaccgtcttcttagtgcactcagcgaa
atggaacttggaaaatcatctgaacaagaatggaacctaatgcgtgagaataatggaaca
atagacttgaaagatgattcacatatttctcagactcatgaggatggtaaatcttctgac
ggagcacttgccgttgaacagagttatgcagggaggaaaagaccaggattgcatgatggt
tcagattttaatcaggataatatgtctggaaaacgtgtaaaatcaacagttggcgttata
gatggatcagtccatgatccaaaagggaatcaggtcaatgtcccttcagttgggcgagca
tcatccattacagctgcagagagcggaccagttccacagcttgttgctatgtttagtaca
ttggttgctcagggtgaaaaggcagctgcatctttggagattctcatttcgagcatatca
gctgacttgctagctgacgtagttatggctaacatccgtaatcttcctcccatataccct
aaatctgaaggagatgaagtcccacttctggatataggtcctcctcctggtgttgaacat
gatgcccatataaaaaatttgtccttgttattgacagaaatactttcacatccaagctct
tcccaactgaaagaagataaaactggatctcatcatcattcaggtttaagagagcttgag
catgctcaagaagaagaggtaacacaggctactgtgggtgacggaaatgttgcatatgac
ggcctagatttttctagtcaacaagcatcagtatctactgttgaatctggttctcgtgaa
gatattccatctggaattcatactggtcattcagccataaaatctgaagtcaccgatgcc
aaacttcaggaggaagaaatacccggtctttctttgtccattcaggatggcagaattgat
gaaaatttaaccgctcttttatcaaattctaccaatttagaggatgctaataatgacaaa
gccactaattttggtaattctcctgtagaattggctcaatctttgtcaactgataggtct
gaggagcttagccctaaagtggccgtaacagattcaactagcatcaattcctcaacgcca
acttctctcgggatgatcgcacagttggttttccccaagataacagcacctgtcattgtc
cttgtcgatgaacagaaggatcagctacaagagcttgcttttttgcgcattattgatgct
tataagcaagttacagctgctggaggatggcaactgcgtgtttctattcttgcacactca
ggaattgagtttccttcagagttagatccatggaagttgctaaagatgcatatattttca
gactacgtaaaacatgaggggcacgagataacattgcgcgtcctctacaggctatttggt
gaggcagaagaagaccgagactttttttcttctacaaccgctacatctgtttatgaaact
tttcttctccacgtgtcagaaacgctaagggattcttttcctgcttctgacaaatctcta
aatagattgcttggggaagttccttatttaccaaattcaatttttaaattgttggagtgc
ttgtgttctcctggatgcaatgcagatgataaagagttacatggtggagatcgagttatc
cagggcctcagtatcgtgtggagcctgattttactgagacctccaatccgagatgctacc
ctcaaaattgctttgaagagttctgttcatcaccttgaagaagtaagcatgaaggcaata
cgtctggtggccaataaactttatcctttatcattcatatctgaaaaaattgaagatttt
gccaaggaaatgttgctgtcggttgccaatgacaatcaaacagttgttacgaatgaggct
gatgttatgcaattgctgatggatgagaagatatcaagtgagaatcaaccaacgggagcg
aaaataaataacattgctgatgacactcagcatgtggctacatctgcaagcgggcaatct
tctgctgtagctgaagtgcaacgttgcatgtctctattttttgccctctgcacaaagaag
cactcccttattcgtcaaatatttgatgtttataaaagcatgtccgaggtggcaaagcag
gcagttcatcaccaactcccattgcttgttcgaacaattggttcatcccatgagctcctt
gatattatgtcagactttccatctggaagtgaagaacttttgattcaggctgtgcataca
cttaccgatggaacaattccttctccagagttattagctaccatacgaaggttatatgat
acaaaaattaaggatgtagacattcttattccgatactgcctttcctgcctaaaaacgag
gttatgcggatttttccatatcttgtgaatgctccaccggataagtttcaagtagctctc
tctcgagttattcaggggttaaataactctggtccagtgttgactccagctgaatcgtta
attgccatccatgggattgatcctgagagggatggaattcctttgaagaaggtcacagat
gcttgtaacgtttgttttgagcagcgagacatattctctcagcaagttctagccaaggtc
ttgaatcaattggttgagcaaattcctctacccttgttgtttatgcggacagtactgcag
gccataggggcttttccttctctggtagaattcataatggagattctttctcgtcttgtt
agcaagcagatatggaaatacccaaaactgtgggtaggattcatgaagtgtgctcttttg
acaaagccacaatcctttggtgtgctgcttcagctacctccggcgcagcttgaaaatgcg
ctgaacagaacacctgctctcaagtctcctttggttgcccatgcaaaccaaccacacata
agatcctcacttccaaggtcctcgctggtggttcttggcattgcatcagatgctcaagca
tctagtcaaccaaaaccaactcagagccagtctgtagaaaatgggaattcaaacaaggaa
gcagtgacagatgtgtcaaaggaatcatcaacttga
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