Primulina huaijiensis: 140964292
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Entry
140964292 CDS
T11038
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
phua Primulina huaijiensis
Pathway
phua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140964292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140964292
03041 Spliceosome [BR:
phua03041
]
140964292
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140964292
Spliceosome [BR:
phua03041
]
Complex B
Other components
Prp19-related factors
140964292
Complex C
140964292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
PPR
Motif
Other DBs
NCBI-GeneID:
140964292
NCBI-ProteinID:
XP_073280035
LinkDB
All DBs
Position
18:6221037..6227007
Genome browser
AA seq
913 aa
AA seq
DB search
MAIPQELYPSEEDYLYEEEVLRNPNSVKLWWRYLIARGEAPFRKRAIIYERALKALPGSY
KLWHAYLRERLELVRNLPINHAQYQTLNNTFERALATMHKMPRIWIMYLQSLTRQKLISR
TRHTFDRALCALPVTQHDRIWEHYLVFVSQKGVPVETSLRVYRRYLKYDPSHIEDFIEFL
VNSELWQEASERLAGVLNDDQFYSLKGKTKHRLWLELCDLLTQHASEVSGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRGLLEKARDIFEEGMTTVITVRDFSVIFDAYSQFEESML
SIKMENMDLSDDEDNEDNENEEKEEEEVDDRLDFEKLKKSVDTFWLKDDKDVDMRLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYESHRDVANARVIFDKAVQVNFKAVDHLASIWCEWAEMELRHKNFKGALDL
MRRATAEPSVEVKRRVAADGNKPVQIMLHKSLKLWTFYVDLEESLGSLESTRAVYERILD
LRIATPQIIINYSMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSK
LERARELFEHAVEMAPAEAVKPLYLQYAKLEEDFGLAKRAMRVYDQATKAVPANEKMGMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKVMCSKYAELERSLGEIDRCRALYKHA
SQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRTVSASYSQTHFILPEYLMQKDQM
QTLDEAKDVLKKAGVDDDEMAALERQLVPSLNDAKVKDNGRRLGFVSGGMQNEGEPVSNR
EDIELPEESDSEDDGKVEIAQKDVPTAVFGGLVRKREESDKDVGASDSTLSESKDNDAHL
GALERIKRMKRGA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcgataccacaggagttgtatccaagtgaagaggattacctttacgaagaagaagtg
ctccgcaaccctaatagcgtcaaactttggtggcggtatttaattgcccgcggagaagcc
cctttccgaaagcgtgccattatttatgagcgagctctcaaggcattgccaggaagctac
aagctttggcacgcatacctccgggaacgccttgagctagttaggaatctgcctattaat
catgcacagtaccaaaccttgaacaacacgttcgagcgagctctggcgacaatgcataag
atgcctcgcatttggataatgtatttgcagtcattgactcgtcagaagttgatttccagg
acgcggcacacctttgatagagctttgtgcgctctcccagttacccaacatgataggatt
tgggaacattatttagtatttgtttcgcagaagggtgtacctgttgaaacttcattgaga
gtgtacaggaggtacttgaagtatgacccgagtcatattgaggattttattgagtttttg
gttaattcagagttgtggcaggaagcttcagagaggctggcaggggttttgaatgacgat
caattttactctctaaaggggaagacaaagcacaggttgtggctggaattgtgcgacctg
ttgacacaacatgctagtgaggtatcagggttgaatgtggatgcaataattcggggagga
attaagaagtttacggatgaggttggcagactttggacatcattggcggattattatatt
aggaggggattactggagaaggccagagatatttttgaggaagggatgactacagtgatt
acggtaagggattttagtgttatatttgatgcatattctcagtttgaagagagtatgttg
tccattaagatggaaaatatggatcttagtgatgacgaggataacgaggataatgaaaat
gaagagaaggaagaggaggaggtggatgataggttggattttgagaagttgaagaagagc
gttgacacattttggttgaaggatgacaaggatgtggatatgaggttggcaaggttggag
tatctgatggataggagaccagagttagctaacagtgtgctcttgaggcaaaatcctcat
aatgtagagcagtggcaccggagggttaagctctttgaagggaaccccacgaagcaaatt
ttgacttacacagaagcagtgaggacagtagatccaatgaaggctgttgggaagccacat
actttgtgggttgcatttgctaagttgtacgagagtcaccgagatgttgctaatgcccgg
gtgatttttgacaaggcagtgcaggtcaattttaaggctgtggaccatctggccagtatt
tggtgtgaatgggcggagatggagctcaggcacaaaaattttaagggtgcactagattta
atgcgtcgagctactgcagagccatcagttgaggtcaagagaagagtggctgctgatggc
aacaagccggtgcaaattatgcttcacaaatctcttaagctttggacgttctatgtggat
ttggaggaaagcttgggtagtctggagtcaactcgtgcagtttacgaaagaatattggat
ttgagaatagccacaccccaaattattataaactattcaatgctcttagaagacaacaag
tactttgaagatgcttttaaggtttatgagagaggtgtgaagattttcaaatacccccat
gtgaaagatatctgggtcacttacctttcaaagtttgtcaagagatatgggaaatcaaag
ctggaacgagcacgagagttatttgagcatgctgtcgaaatggcacctgcagaagcagtg
aaacctctgtatcttcaatatgcaaagctagaagaagactttggtctggctaaaagagca
atgagagtatacgatcaggcaacaaaagctgtgcctgctaatgagaaaatgggcatgtat
gaaatatacatagcccgtgctgctgaaatatttggtgtaccgaaaacgagagagatttat
gaacaagcaatagaatctggcctccctgacaaagatgtcaaggtcatgtgttcgaagtat
gcggagcttgagagaagccttggagaaattgaccgatgtcgtgcattatataaacacgct
tcacagtttgctgaccctagatctgaccctgacttctggaataagtggcacgaatttgaa
gtgcagcatggaaatgaagatactttccgagagatgctccgagttaaaagaactgtttct
gcaagctatagccagacacactttatccttccagagtatttgatgcaaaaggatcaaatg
cagacccttgatgaggcaaaggacgtactaaagaaagctggtgtcgatgatgatgaaatg
gctgccctcgaaaggcagttagtccctagtctcaacgatgccaaagttaaagataatggt
agacgattaggatttgtcagtggggggatgcaaaatgaaggtgagcccgtatcaaatagg
gaggatatagagcttccagaagaaagtgattctgaagacgatgggaaggttgagatagcg
cagaaagatgttccaacagctgtgtttgggggtctggtgcggaaaagagaagagtctgat
aaagacgtgggagcttctgattcaactctttctgaaagcaaagataatgatgcccatctt
ggtgccttggagagaataaaaaggatgaagcgaggtgcatag
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