Primulina huaijiensis: 140978350
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Entry
140978350 CDS
T11038
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
phua Primulina huaijiensis
Pathway
phua03013
Nucleocytoplasmic transport
phua03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140978350
mRNA cycle factors
P-body specific factors
140978350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
140978350
NCBI-ProteinID:
XP_073299406
LinkDB
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Position
6:complement(22050115..22061621)
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AA seq
1194 aa
AA seq
DB search
MEHSEEIGGEHHEKHDDDGRHDHEEANARLEELKKSIEAKMALRQSNLKPERPDSGFLRT
LDSSIKRNTAVIKKLKQINEEQREGLIDELRGVNLSKFVSEAVTAICDAKLKAADIQPAV
QICSLLHQRYTDFAPSLVQGLTKVFAPGKSVEDLDTDKNSRSMKKRSTLKLLLELYFVGV
MEDCSVFINIIKDLTSTEHLKDRDATQTNLSLLCSFARQGRFLLGLPLTGFDILEEFFKE
LNVTADQKKFFRKTFQTYYDASVELLLSEHALLRQMEHENAKILNAKGELSEEHASSYER
LRKSYDHLSRGISSLAEALDMQPPVMPEDGHTTRVTSGEEVLSPVSSKDSSALEALWDDE
DTKAFYECLPDLRAFVPAVLLGESEQKLNEQSPKAQELPTDLVPESEKDQISTVENPEAS
SESEALADDKEGKEKDKQDKDTEKGKEPEKGKGKEKDSERRGENEKDKVKGLDGTNLEAL
LHRLPSCVSRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTC
MKDVSSILLQLLEEEFNSLTNKKDQMNIETKIRNIRFIGELCKFKIAPAGMVFSCLKACL
DDFTHHSIDVACNLLETCGRFLYRSPETTMRMSNMLEILMRLKNVKNLDPRQSTLVENAY
YLCKPPERSARISKVRPPLHQYIRKLLFSDLDKFSIENVLRQLRKLPWSECEEYLLKCFL
KVHKGKYSQIHLIASLTAGLSRYHEDFAVSVVDEVLEEIRLGLELNDYGMQQKRVAFMRF
LGELYNYELVDSSVIFDTLYLTLDFGHGTMEQDILDPPEDCFRIRIIITLLQTCGHYFDR
GSSKRKLDRFLIHFQRYILSKGSIPLDIEFDLQDMFADLRPKMTRHSSLEEVNNALIELE
EHEHRVSSEKARNEKYSDSQKPHSRTSSSSLSTNGQNLVNGTEENDDLYQEIVGETDSDS
GSDTVEHVDRDDEESDGENQDDGCESEDDYEEVGDPASDEDDEVHVRQKVAVVDPQEVAD
FDQELRALMQESLDSRKLEMRSRPTINMMLPMNVFEGSTREHHGRGIEGESGDETTDEGT
GEAKEVRVKVLVKRGNKQQTKQMYIPHDCSLVQGTKQKEAAELEEKQDIKRLVLEYNDRE
EEELHGGTQPPSWTQSGGRVVNRGNTLDGQNRTSGPRHRHLYHSGAGIYYGRRR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggaacactctgaagaaattggcggcgaacatcatgagaaacatgatgacgatggaaga
cacgatcatgaggaagctaatgctcgtcttgaggaattaaagaagtcaattgaagcaaaa
atggctctgcgacagagtaatttgaaacctgaaagacctgactcaggttttctcaggaca
ttggattctagtatcaaacgcaacacagctgttattaaaaaattaaagcagatcaatgaa
gagcagcgagaaggtttaatagatgagttacgtggtgttaatttgagcaaatttgtcagc
gaagcagtaactgctatttgtgatgcaaagcttaaagctgcagacatacagcctgctgta
cagatctgttctttacttcatcaaaggtacacagattttgcaccttctttagttcaaggt
ctcactaaagtttttgcgccgggaaagtctgtcgaggatttagatacagacaaaaattca
aggtctatgaagaagcggagtactctaaaacttctattggaactttactttgttggagtt
atggaagattgtagcgtcttcataaatatcattaaggatctcactagcactgagcatttg
aaggatcgtgatgcaacccagacaaatttgtctcttctctgtagttttgcacggcaggga
agatttctgcttgggcttccactaactggatttgatattctggaagagtttttcaaggaa
cttaatgttacagctgatcagaagaaattctttaggaagacttttcaaacttactatgat
gcttctgtggaacttctcctgtccgaacatgctttacttcgccaaatggagcatgagaat
gcgaagattttgaatgctaaaggtgaactgagcgaggaacatgcttcatcttatgaaagg
ctccgtaaatcatatgaccatctaagtcgtggcatatcatctttagctgaagcgcttgat
atgcaacctcccgtgatgccagaggatggtcatacaaccagagtcacatctggagaggaa
gttctatcgcctgtttccagtaaagattcctctgctcttgaagccctttgggatgatgaa
gatactaaagctttctacgaatgcctaccggatcttagagcatttgttcctgctgtcttg
cttggagagtcagaacaaaagttgaatgaacaatccccaaaggctcaagaactaccaacc
gatttggttcctgaatcagaaaaggatcagatatctacagtggaaaatccagaggcttct
tctgaatctgaagctttagcagatgataaagagggcaaggaaaaggataaacaagataag
gacacagagaagggcaaagaacccgaaaaagggaaaggaaaagagaaggattctgaaaga
cgaggagaaaacgaaaaggacaaagttaaaggtcttgatggaacaaatcttgaagctttg
ctacataggcttccaagctgtgtgagccgtgatctgattgatcagttgaccgttgagttt
tgctatttaaattcaaaatccagtaggaaaaagcttgtgagggctttgtttaatgtccca
aggacgtctttggagctcttgccgtactattcgcgcatggttgctacactttctacttgc
atgaaggatgtctcttccatccttttacagttgttggaggaagaatttaactctttgacg
aataagaaggatcaaatgaatatcgaaacaaagatcaggaacattagatttattggagaa
ctttgcaagttcaaaattgccccagctggaatggtttttagttgtctaaaggcttgtttg
gatgatttcactcaccacagtatcgatgttgcttgcaatctgcttgagacatgtggtcgc
tttctctatcggtcaccagagaccacaatgcggatgtcaaacatgttagagatactaatg
cgcttgaaaaatgtcaaaaacttggatccccgtcagagtactttagtggaaaatgcttat
tatttgtgcaaaccacctgaaagatctgcacgaatctcgaaagtccgtcctcctttgcat
cagtatatcaggaagcttcttttctcagatcttgacaagttttcaatcgagaacgttcta
agacagttacgtaagctgccttggagtgaatgtgaagaatatcttttgaagtgttttttg
aaggttcacaagggaaaatatagccagattcatttgattgcatcacttactgctggtctg
agtcgatatcatgaagattttgctgtttctgtcgttgacgaggttttggaggaaattagg
ctagggttggagttgaatgactatggaatgcagcaaaaacgtgttgcatttatgcggttc
ttgggcgaactgtacaactatgaacttgtagattcatctgttatttttgatactctctat
cttactcttgattttgggcatggaactatggagcaagatatacttgatcctccagaggac
tgctttcgtataagaataattatcactcttctccagacatgtgggcattattttgataga
ggttcatcgaaaagaaagcttgatcggttcttgattcattttcaacgatacatactgagc
aaaggttccattcccctagatattgagtttgacctgcaggatatgtttgctgatttgcgc
ccaaagatgactcgacactcatctttggaggaggttaataacgctctaattgaacttgaa
gagcatgaacatagagtttcatctgagaaggctcggaatgagaaatattcagactcacaa
aaacctcatagcaggacgagttctagttctttatccacgaatggtcaaaatcttgttaat
ggcaccgaggaaaatgatgatttgtatcaagaaattgttggggagacggatagcgattct
gggagtgacactgttgagcacgttgatcgtgatgatgaagaatcggatggagaaaatcaa
gatgacggttgtgaaagtgaggatgattacgaggaagtaggcgatcctgcttcagatgaa
gatgatgaggtacatgtcaggcagaaggtggcagtggtagaccctcaggaggtggctgat
tttgatcaagaactgcgggctttaatgcaggagagcttggattcgagaaagttggaaatg
cgctctcgcccaacgataaacatgatgttgccaatgaatgtgtttgagggttccactagg
gaacaccacgggagaggaatcgaaggagaaagtggcgacgagacgactgatgaaggaact
ggagaagctaaggaggtgcgggtgaaagttctcgtgaagcgtgggaacaagcaacagaca
aaacaaatgtatattccccatgattgctccttggttcagggtaccaaacagaaagaggca
gctgagcttgaagaaaaacaagacattaaacggctcgttttagaatacaacgatagagaa
gaagaggaactccatggagggacacaaccaccaagttggactcaaagtggaggcagagtt
gtgaaccgaggcaatactttggatggacagaataggacttctgggccaaggcatagacat
ttgtatcattcaggtgctggcatttactatggcagaagaaggtaa
DBGET
integrated database retrieval system
