Primulina huaijiensis: 140978490
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Entry
140978490 CDS
T11038
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
phua Primulina huaijiensis
Pathway
phua03440
Homologous recombination
phua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140978490
03450 Non-homologous end-joining
140978490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phua03032
]
140978490
03400 DNA repair and recombination proteins [BR:
phua03400
]
140978490
DNA replication proteins [BR:
phua03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
140978490
DNA repair and recombination proteins [BR:
phua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
140978490
BRCA1-C complex
140978490
NHEJ (non-homologous end-joining)
MRX complex
140978490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
SbcC_Walker_B
Rad50_zn_hook
SMC_N
AAA_29
ABC_tran
DUF1664
Motif
Other DBs
NCBI-GeneID:
140978490
NCBI-ProteinID:
XP_073299683
LinkDB
All DBs
Position
6:complement(23041619..23056364)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGSNGAGKTTIIECLKVACTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAARKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPQTGEKVCLSYRCADMDREIPALMGVSKAIIENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEIIKKLHKDQTQEIKSYKLKLENLQTLKDAALKLRESIVQDQEKSEILNN
QMRELDRKIQYVDSEINQTESSLKDLRKLQSQIATKSGERKSKFEELQKRYAALNEENED
TDEELNEWKFKFDERIAILESKISKLLREKEDVDEKVRVLTEVNGENTKDIAKLQAASEA
HMSTKNERDLTIQNLLVKHNLGPLTSGPFSDEVAFDLTNRIQSKLKYLDKDLQDKKKSNE
VELKATFEQYMVANDRCKDIEAQKEAKGDMKIATLKRIQEKEIERDSFEVQISATDVTGI
DDRERKLQIEVERKASQLAAKDFSATIRKKQGEIFALEQEIKDLNYQRESMSADSHDRVV
LSLKKAELENHKKKHKRIVDEHKEGIRGVLKGRMPPHKDLKNELIQVQSSLQKEYDNLDK
KADEARNEVTMLKIKIEEVNHNLSKFHKDMESRKRFVESKLLSLDKHSGGVDSYLQTLEI
AKDKRDVQKSKYNIADGMRQMFDPFEKVARAHHICPCCERPFSENEEDDFVKKQRVKATS
SAEHMKVLAVDSSNADFHFQQLDKLRVVYEEYVKTGKELVPLAEKNLDELKEELDQKNQA
LDDILGVLAQIKAEKDSVDTLIQPVETADRLFQELQALENQVEDLESKLDVSVQGAKSLE
EIVSELKILENNRSNLHRDLTILREDQLFMTQDLSTHQLRWNSVREEKIKVANLLSNAKR
AEEELNRLAEEKHQVDLELKLLVEDLGPLVKEKNKLLEDYNNSEVRLNHDYELCANNHRK
YQLEVETLLNMNSTIKEYDNLKRGEKLKELLEKQNLSEFELQRCGTRRNELLTELEKCRD
LTRNQAELRRNIEENLEYRKMKAQVDELTREIESLEDSVLKIGGLSKVEAQLLKLSQERE
TLLTELNRHKGTLSVYKSNIDRNKVDLKHAQYKDIDKRHFDQLIQLKTSEMANKDLDRYY
KALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRITKDDYQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgtcgataaaatgctgataaagggtattcggagttttgaccccgaaaacaag
aatgttattactttcttcaagcccttaactctcatcgtcgggtccaacggcgctggcaaa
acaacaataattgagtgcttgaaggtagcttgcaccggtgaattgcctccaaatgcacgt
tccggtcacagctttattcacgacccaaaagtggcaggagagacagagacgaagggccag
ataaagcttaggtttaagactgctgcaaggaaggatgttgtctgcataaggtcatttcaa
ctgactcagaaggctactaagatggagtacaaggcgattgagtcggtcctccaaaccatt
aatcctcagactggagagaaagtttgcctaagctatcgatgtgctgatatggaccgagag
atccctgcgcttatgggggtgtccaaggccatcatcgagaatgttatatttgttcatcaa
gatgaggcaaactggccattgcaagatccatcaacactgaaaaagaagtttgatgatatc
ttttctgcaactaggtacacaaaggccttagagataattaaaaaacttcacaaggatcaa
actcaggagataaagtcatacaagctgaaactggagaatctacagacactgaaagatgcc
gctcttaagcttcgggaaagcattgtgcaagatcaagaaaaatcggaaatattgaataat
caaatgcgggagcttgatagaaaaattcaatatgtggacagtgaaattaaccagactgaa
tcatcattgaaggatctaagaaaattacaaagtcagatagctacaaagtcaggggaaaga
aaatccaaattcgaagaacttcagaagcgttatgcagctctgaatgaggaaaatgaagac
actgatgaagaactgaatgagtggaaattcaagtttgatgaaaggattgcaattttggaa
tccaaaattagcaagttgttgagggaaaaggaagacgtggatgagaaagttcgagttctt
actgaagtcaatggagaaaatacaaaggacattgccaagcttcaagctgccagtgaagct
catatgtctacgaagaatgaaagagacttgaccatccaaaacctattggtcaagcataat
ttgggtcctctgacaagtggacctttcagtgatgaggttgcttttgacctgacaaatcga
attcaatcaaagttgaagtatttggacaaggacttgcaagataagaagaaatccaacgaa
gtagaactcaaggcaacatttgaacaatacatggttgcaaatgaccgttgcaaagacata
gaggcccaaaaggaggctaaaggggacatgaagattgccactttgaaacgcattcaagag
aaggagattgaacgtgactcttttgaagttcagatttcggccactgatgtgactggaatt
gatgacagagaacggaaattgcaaatcgaagtcgaaaggaaagccagccaacttgctgcc
aaagatttcagtgcaactatacggaaaaaacaaggtgaaatatttgccttggagcaagaa
attaaggatcttaactatcaaagggagtccatgagtgctgattcccatgacagagttgta
ctttctttaaaaaaggcagaattggagaatcacaaaaagaaacacaaaagaatagttgat
gaacataaagagggaattagaggggtgttgaaaggaaggatgccgcctcacaaggatttg
aaaaatgaattgattcaggttcagagttctctccaaaaagaatatgataacttggataaa
aaagctgatgaagcaaggaatgaggtgactatgctgaagataaaaatagaagaagtcaac
cacaatctgtccaaattccacaaagatatggaatcaagaaagagatttgtcgaatctaaa
cttctgtccttggacaaacattctggtggtgttgattcttatcttcaaaccttagaaatt
gccaaagacaagagagatgtccagaaaagtaaatataacatcgccgatggaatgcgacaa
atgtttgatccatttgaaaaagttgctcgtgctcatcacatttgcccctgttgcgagagg
cccttttctgaaaatgaggaagatgattttgttaaaaagcaaagagtgaaagcgacaagt
tctgctgagcatatgaaagtattggctgtggattcttcaaatgctgatttccatttccag
cagttagacaaacttcgagtggtctacgaagaatatgtcaaaaccggcaaggaattagtt
cctctcgcagagaagaaccttgatgaattaaaggaagaattggatcaaaagaatcaagct
cttgatgacatactgggtgttttagctcaaataaaggctgaaaaagattcagttgacacc
ttgatacagccagttgaaactgctgataggctattccaggaattacaagctttggagaat
caagtggaagatttggaaagcaaacttgatgtaagtgttcaaggtgccaaatccttggaa
gagattgtgtcagagctgaaaatattggaaaataacagaagcaacttgcatcgtgatctt
acgattttaagagaggatcagttgttcatgacacaggatttgtctactcatcagttaagg
tggaatagtgtaagagaagagaaaattaaggttgccaatctattgtccaatgctaaaaga
gctgaggaggagttaaatcgtcttgcagaggaaaaacatcaagttgatcttgagttgaag
cttttggtggaggatctcggtcctctagtaaaggagaaaaataaacttcttgaggactac
aataactcggaagtcaggcttaatcatgattatgaattgtgcgcaaacaatcacagaaag
taccaactggaagttgaaacccttctcaacatgaattctactatcaaagaatatgataac
ttgaaaaggggagagaagttgaaagaactgctagaaaagcagaatctatcagaatttgaa
ctacaaagatgtgggacccgaaggaacgaactattgacagaactggaaaagtgcagagat
ttgactcgcaatcaagcagaactaagacgcaatatagaggaaaacttagaatacagaaaa
atgaaggctcaggtggacgagctcactcgggagattgaatcactcgaagatagtgtgctg
aagattggaggtctttccaaagttgaagctcagcttctaaagctctcgcaagaaagagag
acacttcttaccgagttaaataggcataaaggcaccttatctgtatacaagagcaacatt
gacaggaacaaagttgatcttaaacatgcccaatacaaagatatcgataagaggcatttt
gatcaactaattcagcttaagacatctgagatggcaaataaggacctagatcgatattat
aaagcacttgacaaagcactcatgcgcttccacagtatgaaaatggaggagataaataag
attatacgggaattatggcagcagacctacaggggacaggatatagattatataagcatt
cattcagattctgaaggtgctggtactcgatcttacagctataaggttgtcatgcaaact
ggtgatgccgagttagaaatgcgaggaagatgtagtgctggtcaaaaggtccttgcttcg
ctcatcataagattggcactagctgaaactttttgcctcaattgtggaatactggcgctt
gatgaaccaactaccaatttggatggccctaattctgagtctctcgctgcggctctcctc
agaataatggaggacaggaaaggccaagagaattttcaacttattgtcattacacacgat
gagcgcttcgctcaacttattggccaacgacaacatgctgaaaagtactaccgtatcacc
aaggatgactatcagcatagcataattgaatcccaagagatatttgattga
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