Primulina huaijiensis: 140979809
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Entry
140979809 CDS
T11038
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
phua Primulina huaijiensis
Pathway
phua03013
Nucleocytoplasmic transport
phua03015
mRNA surveillance pathway
phua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140979809
09122 Translation
03013 Nucleocytoplasmic transport
140979809
03015 mRNA surveillance pathway
140979809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140979809
03041 Spliceosome [BR:
phua03041
]
140979809
Enzymes [BR:
phua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140979809
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140979809
Spliceosome [BR:
phua03041
]
Complex C
Other components
EJC/TREX
140979809
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140979809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
140979809
NCBI-ProteinID:
XP_073301491
LinkDB
All DBs
Position
6:complement(17250731..17255193)
Genome browser
AA seq
428 aa
AA seq
DB search
MGDNKENDAYEEELLDYEEEDERVTDAVNAKVNGESTKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVSVFCGGVSIKIHKDILKNECPHIVVGTPGRILG
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RTAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagataacaaggagaacgatgcgtatgaagaagagcttctcgattacgaagaagaa
gacgaaagagtcacggacgctgtcaatgctaaagtaaacggagaatccactaaaaaggga
tacgttggaattcatagttcaggattcagagacttcctcttgaagccagagcttttgcgg
gctattgtggactcggggtttgaacatccctcagaagttcaacatgaatgcatacctcaa
gctattttgggaatggatgttatctgccaagcaaaatctggtatgggaaaaacagctgtg
tttgtcctttcaactttgcagcagattgaacccgttgcaggtcaagttgctgctcttgtt
ctctgtcacacaagggaactagcttatcagatatgtcatgaatttgagcggttcagcaca
tatctaccagatatcaaagtttctgttttctgtggcggtgttagcatcaaaatccacaaa
gatattttgaagaatgaatgccctcacattgttgttggaaccccagggaggatacttggt
ctggctagagacaaggacctttctctgagaaatgtgaggcatttcattttggatgaatgt
gataagatgctggagtctcttgatatgaggagagatgtgcaggaaattttcaaaatgacg
cctcacgacaagcaagttatgatgttttcggcaacacttagcaaggagattcgaccggtt
tgcaagaaattcatgcaagatcctatggaaatttatgtggatgatgaggccaaattgact
cttcatggtctcgtacagcactacatcaaattgagtgagctggaaaaaaaccggaagctg
aatgatttgctcgatgctctagactttaatcaggttgtcatctttgtcaaaagcgtgaat
agaactgcagagctgaacaagttactggtggagtgtaacttcccatctatttgtattcac
tctggcatgtcccaagaagaaagattgacgcgatacaagggatttaaagaagggcataaa
agaattcttgtagcaacagatcttgttggtagaggaattgacatagagcgagtaaacatt
gtgattaattatgatatgccagattctgcagacacttatctgcatagggtgggtagagct
gggcgctttggaaccaaaggacttgccatcacatttgtttcttctgcatctgattcagat
gttctcaatcaggttcaagaaaggtttgaagttgatattaaagaacttcctgagcagatt
gatacatctacatacatgccgtcttag
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