Primulina huaijiensis: 140980780
Help
Entry
140980780 CDS
T11038
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
phua Primulina huaijiensis
Pathway
phua04120
Ubiquitin mediated proteolysis
phua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140980780
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
140980780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phua04121
]
140980780
Enzymes [BR:
phua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140980780
Ubiquitin system [BR:
phua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
140980780
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
140980780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
zf-C3HC4
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
WD40_like
zf-C3HC4_3
zf-RING_2
WD40_RFWD3
Beta-prop_WDR75_1st
zf-RING_UBOX
zf-C3HC4_4
Beta-prop_DCAF12
U-box
zf-RING_5
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_2nd
DUF1664
zf-RING_10
zf-rbx1
zf-Nse
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
140980780
NCBI-ProteinID:
XP_073302919
LinkDB
All DBs
Position
7:complement(2271571..2277758)
Genome browser
AA seq
677 aa
AA seq
DB search
MGGGSTSVGALVPTVKSEPVNSSADAPPAQSTPELPPSEERAVEEFDKDVLCPICMQIIK
DAFLTACGHSFCYTCIVTHLQNKSDCPCCSHFLTANKLYPNFLLSKLLMKTSARQIAKTG
SPLEQLRRALEQGCEASVKELESLLLLLAEKKSKMEQEEAETNLQILLDFLQYLKKKKLD
ELNEVLSDLQYIKEDIHAVERRRIEMYRRRDRYSTKMRMLVDEPASKTVWPSLIDKHGGS
TVSRTTTAQGLYLVSPGGSLNRKTDSKSPSCHLTPRKDSFGGSDNQNLNQSGLALARKRR
VHAQFNELQDCYLQKRRHSARLSREQQEKNSHPSNREGYTEGLEDFQSVLSTFTRYSRLR
VIAELRHGDLFHSANIVSSIEFDRDDQLFATAGVSRRIKIFEFSSVVNDPADVQCPVAEM
STRSKLSCLSWNKYTKNHIASSDYEGIVTVWDVATRQSVMEYEEHEKRAWSVDFSRMEPS
MLVSGSDDCKVKIWCTKQEASVLNIDMKANICSVKYNPGSSIHVAVGSADHHIHYYDLRK
ISQPLYIFSGHRKAVSYVKFLSNNELASASTDSTLRLWDVKDNVPLRAFRGHTNEKNFVG
LTVNSEYIACGSETNEVFAYHKAISKPSACHKFSSDVDESIEDANYFISAVCWKSDSPTM
LTANSQGTXELYELVFY
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcggaagtacttcagtcggtgcgctggtgccaacggttaagtccgagccggta
aattcctccgccgatgcgccgccggctcagtctacaccggagctacctccctcggaggaa
cgggcggttgaagagttcgataaagatgttttgtgcccgatatgtatgcagattattaag
gatgcttttttgacggcgtgcggacatagtttctgctacacgtgtattgtgactcatcta
cagaataagagtgattgcccttgctgctctcattttctcaccgccaacaaactctacccg
aatttcctccttagcaagttgttgatgaaaacttctgctcgtcaaatagccaagaccggc
agtcctttggaacaacttcgtcgggccttagagcagggatgtgaagcatcagttaaagag
ctggagagccttttgttacttctcgcagagaagaaaagtaaaatggagcaagaagaagct
gagacaaatctgcaaattctgctcgactttctgcagtatttgaaaaagaaaaaactggat
gagctcaatgaggtactatccgaccttcaatatatcaaagaagatatacacgcggtggag
agacgacgaatagagatgtaccgaagacgggatagatactcaaccaaaatgaggatgctt
gttgatgaacctgcttctaaaacagtatggccatctttgattgataagcatggtggttct
acggtctctagaaccactactgcacagggcttgtaccttgtgagtccaggaggttcacta
aacagaaaaactgattcaaaatctccgtcatgtcatttaaccccaaggaaggattctttt
ggtggttcagacaatcaaaatcttaatcaatctggacttgcattggcaagaaagagacgg
gttcatgcacagttcaacgaacttcaagactgttacttgcaaaaaaggcgacattcagca
agactatcacgagaacagcaagaaaaaaattctcatccttcgaacagggaaggatacact
gaggggctcgaggattttcagtctgttctatcaaccttcacaagatatagtcggttgcgg
gtaattgctgaacttaggcatggagatctgtttcattcagccaatatcgtatcgagtata
gaatttgatcgagatgatcaattgttcgctactgctggagtatctcggcgcatcaagatt
tttgagttctcatctgttgtcaacgatccagccgatgtgcaatgtcctgttgcagaaatg
tcaacacgatcaaaactcagctgtttgagctggaacaagtatacaaaaaatcacatagcc
agcagcgactatgaaggcatagtaactgtttgggatgtggctactcgacagagtgtgatg
gaatacgaggagcacgaaaagcgtgcctggagcgttgatttttcacgtatggaaccttca
atgcttgtgtctgggagtgacgattgcaaggtcaaaatttggtgcacgaaacaggaggca
agtgttcttaatattgacatgaaagctaatatatgttccgtcaagtataatcctggatct
agcattcatgtagctgttggttctgcagatcatcacattcattattatgacctgagaaaa
atcagccaacctttgtatatttttagtgggcataggaaggcggtctcatacgtgaaattt
ttatccaacaatgaactagcctctgcatctacagacagtacgttgcgcttgtgggatgtc
aaggataatgttccactgcgtgcattcaggggccatacaaacgaaaagaattttgtgggc
ctcacagtgaatagcgaatacatcgcgtgtggcagtgaaacaaacgaagtttttgcgtat
cacaaggcaatttctaaaccttcagcatgtcacaaattcagttctgacgtggatgaatcc
attgaagatgcaaattacttcatcagtgcagtatgttggaagagcgatagtccaactatg
ctaacagcaaacagtcaagggaccngtgaattatatgagttggtattttattaa
DBGET
integrated database retrieval system
