Primulina huaijiensis: 140982065
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Entry
140982065 CDS
T11038
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
phua Primulina huaijiensis
Pathway
phua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140982065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140982065
Enzymes [BR:
phua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140982065
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140982065
mRNA degradation factors
3'-5' decay
Ski complex
140982065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
140982065
NCBI-ProteinID:
XP_073304580
LinkDB
All DBs
Position
1:complement(17451694..17498532)
Genome browser
AA seq
1370 aa
AA seq
DB search
MDRVPASDELSFRVGFTGHSGHLRIEPLPPVERQNPLHSIPDFILPPAFPRETPESVKEY
IKEKYLEPRLDDDIFCPENSGKQWEFDWFDRAKIQLEPSLPRSVVVPLWEMPSRRKKHGE
MDRWEPESVEVDISELTAGADNSGSLPRIVGPAKDFVKGSINSRPFHPGGLVDVDSLGKI
LPDGCYNGEWAQELLNGGPAQVLPPGFKEGLNLGHLKLLKEHSCTWNVTENANADKGTSA
VKLNELSLQFDDLFKKPWEEDVFEYIGDATIPGGTQIESVKESSQIAIEIRDPTEIKSST
EIKDPTKINDLNVADNVIKKPSSLLDEILSSESKELMPRLVGDTNIGGQQPKEAWALSGG
SEEIAERFHELVPDMALTFPFELDSFQKEAIYYLERGDSVFVAAHTSAGKTVVAEYAFAL
ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPDADCLIMTTEILRSMLYR
GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINFVLLSATVPNTLEFADWISR
TKQKQIRVTGTTKRPVPLEHCLFYSGEFFNICENEKIIPQGLKAAKDLSKKNNSVTVKSG
AGSGSLPANERARNQKRESSFNAKQAKHFGSQNLVNSGGGWGYQTNASNSWGLRRSEASI
WLLLINKLAKKFLLPVVIFCFSKNRCDKSADNLTGTDLTTGSEKSEIRIFCDKAFSRLKG
SDRNLPQVVRVQGLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPA
RTVVFDSLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVIVMCRDDIPEEKDLKHVL
VGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKQQLLMRKLAQP
TKIIECIKGEPGIEDYYELYLEAEKYGNHIAEAVMQSPVSQQHLTPGRVVLVKSQWAQDH
LLGVVIKAPSANYKQYIVLVLTPEIPPGLPTPSSSGAKKEHTDFQILVPKSKRGLGDDYY
SSASSRKGSGVVNLKLPHRGIAAGVSYEVRGVDNNEFLSICSHKIIIDQVGLLEDVSVGA
YSKTVQKLLILKSDGNKYPPALDPVKDLKLKDLDIVEAYYKWNILLQKMAQSKCHGCVKL
DENIKMAREIKRHKEEVNALKFQMSDEALQQMPDFQGRIDVLKETGCIDADLVVQIKGRV
ACEMNSGEELICTECLFENQLDGLEPEEAVAIMSAFVFQQKNTSVPSLTPKLSEAKMRLY
DTATSLGELQSKFKLQVDPQEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVR
TILRLDETCREFRNAAAIMGNSALHKKMETASNAIKRDIIFAASLYITGV
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggtgcctgcctcagatgagttatccttccgtgtgggattcacggggcatagt
ggccatctcaggattgaacctctcccgccggtggaacgccaaaatccacttcattccatt
ccagattttattctcccaccggcattccctagggaaacacctgaatcggtaaaagagtat
ataaaggagaaatatttggaaccgaggttggatgacgatattttttgtccggaaaattct
ggaaagcaatgggagtttgactggttcgacagggccaaaattcagttggagccatctctc
ccacgttccgtggttgttccattatgggaaatgccttctaggcgcaaaaaacatggggag
atggatagatgggagccagagtcggtggaggtggatatatcggaattgacagcaggagct
gataactctggttctttgccgcgaattgttggacctgctaaggattttgttaagggaagt
ataaatagtcgtccttttcacccaggtggactggttgatgttgattctttggggaaaatt
cttccagatggttgttacaatggtgaatgggcacaagaacttcttaatgggggccctgca
caagtacttcccccaggctttaaagagggactgaatctaggtcatctcaagcttttgaag
gagcattcttgcacatggaatgtcaccgaaaatgcaaatgcggacaagggcacatcagct
gtaaagctgaatgagctgtcattgcagttcgatgacttattcaagaaaccctgggaagag
gatgtctttgagtacattggagacgctactatacctggcggaacgcagatagagtctgtg
aaggaatctagtcaaatagcaatcgagataagagatccaactgagataaaatcttcaact
gagataaaagatccgaccaagataaatgatctaaatgttgctgataacgtgataaagaaa
ccatcctctcttcttgatgaaatattgtctagtgaatcaaaagaattaatgcctagatta
gtcggagatacaaatatcggtgggcagcaaccaaaagaggcatgggctcttagtggggga
agtgaagaaattgccgaacgatttcatgaactcgttcctgatatggcacttacatttcca
tttgaactcgattctttccaaaaggaggccatatattatcttgaacggggagattctgtt
tttgtagctgctcatacatcagctggcaagacagttgttgccgaatacgcatttgctctg
gcttcaaaacattgcacaagagctgtatatacggctccaattaaaacgattagcaatcag
aagtacagagatttttgtggaaaatttgatgttggtctacttaccggtgacgttagcttg
aggccagatgctgattgtctcattatgaccactgagatattgagatcaatgctctatagg
ggtgctgatataatacgtgacatagaatgggttatattcgatgaagtgcattatgttaac
gacattgaaagaggggtggtttgggaggaagttattatcatgcttccgaggcatatcaat
ttcgtactgctctcagccactgtgcctaacacattggagtttgctgattggattagtcga
acgaagcaaaagcaaattcgtgttactgggaccactaaaagaccagtccctctggagcac
tgtcttttctattctggagagttttttaatatttgtgaaaatgagaagatcatccctcag
gggttaaaagctgccaaagatctgtccaaaaagaataattccgtcacagttaaaagtggt
gcagggtctgggtctttacctgccaatgaaagggccaggaatcagaaacgtgaaagttct
tttaatgcgaaacaggccaaacattttggatctcagaatttggtgaactctgggggtgga
tggggttatcaaaccaatgctagcaacagttggggattgaggagatcagaagcttccata
tggttgctgcttattaataagctagcaaaaaaattcctcttgcctgtggttatattctgc
ttttcaaagaaccgatgcgataaatcagcggataacttgactgggacggacctcacgact
ggctcagagaaaagtgaaattcggatcttttgtgacaaagcattctcaaggctcaaagga
tcggatagaaatctaccgcaggttgtcagagttcaaggccttcttcgaagaggaatcggt
gtacaccatgctggacttctcccaattgtgaaagaagtagttgaaatgctattctgtcgt
ggtgttatcaaggttttgttttcaacagagacatttgcaatgggagtcaatgcccctgca
aggacggttgtttttgattctttaaggaaattcgatggcagggaatttcgacaattactt
cccggagaatatactcagatggctggtcgggctggtaggagaggacttgataaaattggt
acagtaattgttatgtgtcgtgatgatattcctgaagagaaggatttgaaacatgtttta
gttgggagcgcaactaggcttgaatctcagtttcgattgacatatatcatgatcttgcat
ctgctacgtgttgaagagttgaaggtggaagacatgctgaaaagaagttttgctgaattt
catgctcagaagaatcttccagagaaacagcaacttctaatgcgaaagcttgctcaacca
acaaaaataattgaatgtattaaaggtgaacctgggatagaggattattatgagttgtat
ttggaggctgagaagtatggcaatcatatagcagaggcagtcatgcagtcaccagtttct
caacagcatttaactccgggaagggtggtattggtgaaatcacaatgggcccaagatcat
ttactaggtgttgtcatcaaagcaccttcagccaattataaacaatacatagtcttagtg
ttgacgcctgaaatacctccgggattgccaactccatcaagcagtggagcaaagaaagaa
cacacagatttccaaatattagtgccaaaatcaaaaaggggtttgggagatgattattac
tcttcagcatcatctcgtaaaggatctggtgttgtcaatttgaaactacctcaccgtggt
atcgctgctggggtgagttatgaggttagaggagttgacaataatgagtttttatccata
tgcagtcacaaaataattatcgaccaagttgggcttctggaagatgtgagtgttggtgcc
tattctaaaacggtacagaagcttttgattttgaaatcagatggaaataaatacccacca
gctttagatccagtgaaagatctgaagttgaaagaccttgatattgtcgaggcttactac
aaatggaatatcctgttgcagaagatggcgcaaagtaagtgtcatggttgtgtcaaactg
gatgagaacattaagatggctcgagaaattaagcgacacaaagaggaagtgaatgctctt
aagtttcaaatgtcagatgaagctcttcaacagatgcctgattttcagggccgaattgat
gttttgaaggaaactggatgcatagacgccgatcttgtagtgcaaattaaaggtcgtgtt
gcttgtgaaatgaattctggggaggagttgatatgtacagagtgcttgttcgagaatcaa
ttggatggcctggaaccagaagaagctgtggctataatgtcggctttcgtattccagcaa
aagaacacatctgtacctagtcttaccccaaagctctctgaagctaaaatgagactgtat
gacacagcaacaagccttggggagcttcaatcaaaattcaaactacaggtcgatccccag
gaatatgcccgagagaatctcaagtttggtctagtcgaagttgtgtatgagtgggcaaag
ggaactccatttgctgatatttgtgaactcactgatgttcctgaaggcatgatagttagg
acgattcttagattggatgaaacgtgccgtgaattcagaaatgctgcagcaattatgggt
aattctgcactccacaagaaaatggaaaccgcttccaatgcaattaagagggacatcatc
tttgctgctagcttgtacattactggtgtttag
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