Primulina huaijiensis: 140982736
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Entry
140982736 CDS
T11038
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
phua Primulina huaijiensis
Pathway
phua03013
Nucleocytoplasmic transport
phua03015
mRNA surveillance pathway
phua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140982736
09122 Translation
03013 Nucleocytoplasmic transport
140982736
03015 mRNA surveillance pathway
140982736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140982736
03041 Spliceosome [BR:
phua03041
]
140982736
Enzymes [BR:
phua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140982736
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140982736
Spliceosome [BR:
phua03041
]
Complex C
Other components
EJC/TREX
140982736
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140982736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
140982736
NCBI-ProteinID:
XP_073305502
LinkDB
All DBs
Position
8:15562091..15567034
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKENDAYEEELLDYDEEDEKVTDSVTARVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaccaaggagaacgacgcttacgaagaggagcttctcgactacgacgaggaa
gacgagaaggtcaccgactccgtcaccgccagagtcaacggcgagtccgccaagaagggt
tatgtaggcattcacagttcaggattcagagatttcctcttgaagccagagcttttacgg
gctattgtggattctggatttgagcatccgtcagaagtgcaacatgaatgcatacctcaa
gctatcttgggaatggatgttatttgccaagcaaaatccggtatggggaaaactgctgtg
tttgttctctcaacattgcagcagattgaacctattgcaggtcaagttgctgctctcgtt
ctgtgtcatacaagggaattggcttaccagatctgtcatgaggttgagcggttcagtaca
tatttacctgatatcaaagttgctgttttttatggtggtgtcaacattaaaatccacaag
gatctcttgaagaatgaatgtcctcacattgtcgtgggaacaccgggaaggatacttgct
ctcgcaagagacaaggatctttctttgaggaatgtgaggcattttattctggatgaatgt
gataagatgctcgagtcccttgatatgaggagagatgttcaggagatctttaagatgaca
cctcatgataaacaagttatgatgttctcagccacactcagcaaggagattcgaccagtt
tgcaagaaattcatgcaagatccaatggaaatctatgtggacgatgaggccaaattgact
ctccatggtcttgtgcagcactacatcaaattgagtgagctggagaaaaaccggaagctg
aatgatctcctcgatgcattggacttcaatcaagttgtcatttttgtcaaaagcgtcagt
agagctgccgagcttaacaagttgcttgtggagtgtaattttccatctatttgcattcac
tcgggcatgtcccaggaagaaagattgactcgttacaagggattcaaagaagggcataag
agaattctcgttgcgacagatctggtgggaagaggaatagacattgaacgagtgaatatt
gtgatcaactatgatatgccagattcagctgacacttatctccaccgggtgggtagagct
gggcggttcggaaccaaaggacttgccatcacgtttgtttcttctgcatccgattcagat
gttcttaatcaggttcaggagagatttgaagttgacatcaaagagctaccagagcaaatt
gatacatctacatacatgccatcttga
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