Primulina huaijiensis: 140984279
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Entry
140984279 CDS
T11038
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
phua Primulina huaijiensis
Pathway
phua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140984279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140984279
03012 Translation factors [BR:
phua03012
]
140984279
Enzymes [BR:
phua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140984279
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140984279
Translation factors [BR:
phua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140984279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
AAA_23
ABC_tran
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
140984279
NCBI-ProteinID:
XP_073307661
LinkDB
All DBs
Position
9:complement(18203732..18224168)
Genome browser
AA seq
1167 aa
AA seq
DB search
MRSRLGGFLARTAIKSSNHSHLSSTFLFPLNPDIINVLYAGNRACLCNFMENFRRFKLQK
LSSYPVIFRSGFCGYAAEQFSDDEYECDYENHPASSSVVNIDEWKWKLSMLLRNDKDQEI
VSRDKRDRRDFEQIARLAKHMGLYCELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLS
LQRRVEGLLQEHLDRTLLNSGKADPSLSELDTKNHVENANTDENAESFLDASVMEKVLQR
QSLRMRNMQRTWQESPEGNRMLDFRRSLPTFREKERLLQAIARNQVIVISGETGCGKTTQ
LPQYILESEVESGRGAFCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGKKS
KNTHLLFCTSGILLRRLLSDRNLGDVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRL
ILMSATLNADLFSDYFGGAPMIHIPGFTYPVTAHFLEDILEMTGYKLNSFNQIDDYGQEK
MWKTQRQLAPRKRKNQITTLVEEALNKSNFENYGSAVVESLSCWAPDCIGFNFIEAVLCH
ICRKERPGAVLVFMTGWEDISCLRDQIKAHPLLGDPNRVLLLICHGSMATSEQRLIFEKS
PPNVRKIVLATNMAEASITINDIVYVVDCGKAKETTYDALNNTPCLLPSWISQASARQRR
GRAGRVQPGVCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESTIDFLSAALQ
PPEPLAVKNAVEFLKMIGALDESENLTPLGKFLSVLPVDPKLGKMLVMGSIFSCFDPVLT
IVAGLSVRDPFLLPQDKKDLAGSAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCW
RNFLSVQTLQAIHSLRKQFTYILKDAQLLDEDGSINNRLSHNQSLVRAVICSGLFPGIAS
VVHRETSMSFKTMDDGQVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSI
LILFGGGIDCGGMAGNLKMLGGYIDFFMDPSLSECYVKLKEELEKLLQKKLQDPCLDINK
EGKYLMLAIQELVSGDQSEGRFVFGRENKKPRESSYRERFTQDGTNPKSLLQTLLMRAGH
SPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKVLSEKDAAIEALAWLTQTSEDNHDED
NKSLPDVTDSMLKLLGKRRRSKRGRSG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcccggcttggaggctttcttgcacgtactgctataaaatcgtcgaatcactcg
catctttcttcaacattcctattcccgttgaacccagacatcataaatgtcctatatgcc
ggcaatcgtgcttgtttatgtaattttatggaaaattttcgtaggtttaagctgcagaag
ttaagtagctatcctgttatttttcggagtgggttttgtggttatgccgccgagcagttc
tctgatgatgagtacgaatgtgattatgaaaaccacccggcgtcatcatcagtggtgaac
attgatgagtggaaatggaagctgagcatgctgttacgtaatgataaggatcaagaaatt
gtgtctagagataaaagagacaggagagactttgaacaaatagccagacttgctaaacac
atggggctttactgtgaactgtatggtaaagtggtagttgcaagcaaggttcctcttcct
aactacagaccagatttggatgacaagcgacctcaaagggaggttgtgatcccattgagc
ttgcaaaggagggtggagggtttgctccaggaacatcttgacaggacattgctgaactct
ggaaaagcagatccttctttgagtgaattggataccaaaaatcatgttgaaaatgcaaat
actgatgaaaatgccgagtcattcctcgatgcttctgttatggagaaagttctccagagg
cagagtttgcgcatgcgtaatatgcagagaacttggcaggagtcacctgaaggcaacagg
atgctagattttagaaggtctctccccaccttcagggagaaggaaaggcttcttcaagct
atagctcggaatcaggttatagtgatttctggggagaccggatgcggtaagaccactcaa
cttcctcagtatatattagagtccgaggtagagtctggtcggggagcattctgtaacatt
atttgcacgcagcctcgaagaatatcagccatggctgtagcagaaagagtctccgcagag
aggggagagcctcttggtgaaacagttgggtttaaagtacgattagaaggcaagaaaagc
aagaacacacatttgcttttttgcaccagtggaattttgctccgcaggctcttgagtgat
cgcaacctgggtgacgtaactcatgtttttgtggatgaaattcatgagcgaggcatgaat
gaagactttttgttgattgtcttgaaggatcttcttccaagacgtcgggatttaaggttg
atcctgatgagtgccactcttaatgctgatctgttttctgattatttcggtggcgcacca
atgattcatattcctggcttcacatatcctgtaacagcacactttctggaagatattctg
gagatgactggatataagttgaattcattcaaccaaatagatgattatggccaagagaaa
atgtggaaaacacagagacaactagcaccacgaaaaagaaaaaaccaaatcaccactctt
gttgaggaagccctgaataaatcaaactttgagaactatggttctgcggttgttgagtca
ttgtcatgctgggcacctgattgtattggattcaactttatcgaggctgtgttgtgtcat
atatgtcgcaaggagcgtccgggtgctgttttggtatttatgactgggtgggaagacata
agttgtttgagggatcaaataaaagctcaccctctcttgggggaccccaacagggtcttg
cttcttatatgccatgggtcaatggccacctctgaacagagactcatctttgagaaatca
cctcctaatgttcgcaaaatagtacttgcgacaaacatggccgaggctagcataacaatc
aatgacatagtttatgtcgttgactgtggaaaagcgaaggagactacatatgatgcctta
aataacacaccttgtttactaccttcgtggatatcccaagcttccgctagacagagaagg
ggtagggcaggtcgtgtgcagccaggcgtgtgctaccacttatatccaagatgtgtttat
gaagcttttgctgaatatcaacttcctgaacttctaagaactccactgaattctctgtgt
ctgcaaattaaaagtttgcaagttgaaagtactatcgattttttgtctgctgctcttcag
cctcctgaaccgttggcggtgaaaaatgctgttgaatttttgaagatgatcggtgctttg
gatgaaagtgagaatcttacacctcttggaaagttcttgtcagtgctaccagtggatcct
aagctcgggaaaatgctagttatgggttctatatttagttgctttgaccctgtattaacg
attgtggccggtctcagtgtcagggatccttttcttctacctcaagataaaaaggattta
gcaggctctgccaagtctagattctctgctaaggactatagtgatcatatggctcttgtt
cgtgcctatgaaggatggaaggaagcagaaagagaaggttctgcatatgaatattgctgg
agaaacttcctttctgtccagactcttcaagctatccattctcttcgtaagcagttcact
tacattttgaaagatgctcagttgcttgacgaagatggatcaatcaataacagattaagt
cacaaccagtctttggtccgtgctgtaatatgttctggtctattccctggaattgcttct
gttgtgcacagggaaacatcgatgtctttcaagacaatggatgatggccaggtttttctc
tatgcgaattctgtaaacgctcgttatcaaacaatcccatacccatggttggtttttggt
gagaaggtgaaagtcaatacagtattcatacgtgattcgactggagtatctgattccatt
ttgatcctttttggtggtggcattgactgtggtggtatggcaggcaatttaaagatgttg
ggtggatatattgacttcttcatggatccgagtttgtcagagtgttatgtcaagctgaaa
gaggagctcgaaaagcttttgcaaaagaagcttcaagatccctgcttggatatcaataaa
gaaggaaagtacctaatgcttgctattcaggagctggtttcgggtgatcaaagcgaagga
agatttgttttcggtcgtgaaaataagaagcctcgagagtctagttatcgcgaaagattt
acacaagatggtacaaatcccaagagcttacttcaaactctgttaatgagagctggtcat
tcacctccgaaatataaaacaaaacatctcaagacaaatgaatttagggcgttagtggag
ttcaagggcatgcagtttgtgggaaaaccgaagagaaataaagtcttgtctgagaaagat
gcggctattgaagcgttggcttggttaacccaaacttctgaggataaccatgatgaagat
aataaatctctgcctgatgttactgacagcatgctgaaacttcttggcaaacgaaggagg
tcaaaacgggggcgatcaggttga
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