Primulina huaijiensis: 140984483
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Entry
140984483 CDS
T11038
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
phua Primulina huaijiensis
Pathway
phua03040
Spliceosome
phua04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140984483
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140984483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phua03041
]
140984483
04121 Ubiquitin system [BR:
phua04121
]
140984483
03400 DNA repair and recombination proteins [BR:
phua03400
]
140984483
Enzymes [BR:
phua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140984483
Spliceosome [BR:
phua03041
]
Complex B
Other components
Prp19 complex
140984483
Complex C
Prp19-CDC5 complex
140984483
Ubiquitin system [BR:
phua04121
]
Ubiquitin ligases (E3)
U-box type E3
140984483
DNA repair and recombination proteins [BR:
phua03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
140984483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
U-box
Beta-prop_DCAF12
KNTC1_N
DUF1635
PAS_11
zf-Nse
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
140984483
NCBI-ProteinID:
XP_073308038
LinkDB
All DBs
Position
9:complement(20586194..20596485)
Genome browser
AA seq
525 aa
AA seq
DB search
MNCSISGEVPEQPVVTKNSGLLFEKRLIERHILDYGKCPITGESLTMEDIVPIKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQIPLSFAAQNAANAAPLSNGKRAAEEDEMGPDGKRMRPGISSSIIS
ELTDCNAALSQQRKKRQIPSTLAPVDALERFTQLNSHPLHRTNKPGILSLDIQYSKDIIV
TAGVDSNAVVFDRPSGQIVSTLSGHSKKVTNVKFAAEAEFIVTGSADKTVRVWQGSENGN
YDCRHILKDHTAEVQAVTIHATNNYFVTASLDSTWCFYDLASGLCLTQVEDASGSSEGYT
SAAFHPDGLILGTGTTGAIVKIWDVKSQANVARFDGHIGAVTSISFSENGYFLATAAQDG
VKLWDLRKLRNFRTFSPYEENTPTQSVEFDHSGNYLAIGGSDIRVYQVANVKSEWNCIKT
FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRIFGLPEEDGPSES
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaattgttccatttccggagaggttccagagcaacctgtcgtcacgaagaattcaggt
cttctcttcgagaaacgcttaatcgagcgccacatcttggattatggaaaatgtccaatt
actggagaatcactgacaatggaagatattgttccaatcaagactgggaagatagtgaag
cccagaccagtgcaagctgcaagcattcctggaatgctgggaatgtttcagattgaatgg
gatggtttgatgctttcaaattttgcgctggagcaacaattacatactgcaaggcaagag
ctaagtcatgcattatatcagcatgatgcagcatgtcgtgttattgcaagattgaagaag
gaaagggatgaggctaggtcattactggcacaggctgaaagacagattcccttgtcattt
gctgcccaaaatgcagcaaatgctgctccattaagcaatgggaaaagagctgctgaggaa
gatgagatgggcccagatgggaaaagaatgcgtccaggaatatcgagtagtattatttct
gagcttacagactgtaatgctgctctttcacaacaaaggaaaaagcgccagataccttcg
acattggctcctgttgatgctttggagaggttcactcaacttaacagccaccctcttcat
cgaactaataaacctggcatattgtctttggatattcagtattccaaggacatcattgtc
actgctggggttgattcaaatgctgtagtctttgataggccctcaggacagatagtatcg
actctaagtggtcattcaaaaaaggtcacaaatgtcaaatttgctgctgaggctgaattc
atagttactggctcggctgataagacagttcgagtgtggcaaggatctgaaaatggaaac
tatgattgtaggcatattttgaaggatcatactgctgaggtgcaagctgttacaattcat
gccaccaataactactttgttacggcttctcttgatagcacatggtgcttctatgatcta
gcttctggtttatgccttactcaggttgaggacgcatctggatcttctgaaggctacaca
tctgcagcttttcacccagatggtctcatccttggaactggtaccactggggctattgtt
aagatttgggatgtgaagagtcaggcaaatgttgcgagatttgatggacatattggagca
gtgacttccatttcattttcagaaaatggttacttcctggcgactgctgctcaagatggt
gttaagttgtgggatctacgaaaattgaggaactttaggactttctcaccatatgaggag
aatacacctacacaatcagtggaatttgatcatagtggaaattaccttgcaataggagga
tcggacattagagtttatcaagttgccaatgtcaaatctgaatggaattgtatcaagaca
ttccctgatttgtcaggcacaggcaaagcaacatgcgtaaaatttggccctgatgcaaaa
tacatcgctgttggctctatggatagaaatctcagaatatttggacttcccgaggaggat
ggtccatcagaatcttga
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