Primulina huaijiensis: 140988238
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Entry
140988238 CDS
T11038
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
phua Primulina huaijiensis
Pathway
phua03013
Nucleocytoplasmic transport
phua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140988238
03015 mRNA surveillance pathway
140988238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phua03019
]
140988238
Enzymes [BR:
phua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140988238
5.6.2.5 RNA 5'-3' helicase
140988238
Messenger RNA biogenesis [BR:
phua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140988238
mRNA cycle factors
Common to processing body (P body) and stress granule
140988238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
Viral_helicase1
PhoH
SRP54
AAA_16
AAA_22
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
140988238
NCBI-ProteinID:
XP_073313346
LinkDB
All DBs
Position
11:16870034..16889369
Genome browser
AA seq
1270 aa
AA seq
DB search
MDSQANNLYETASQPDEGNDAYTFLEFHTQGEEDFAYPEFQELSQPIRLSSSLWPAPSDS
IAGSDTAFSTESSPTNKLRGGISNSNNNNSAASGSGSGNNGSKEGVVEALAAGMSGLNFE
ETGDDEVFDYGKGDFAEHACKYCGITNPACVARCNVPSCRKWFCNSRGNTSGSHIVNHLV
RAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSSNALKD
MNWDLSQWCPLIDDRCFLQWLLKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLE
KPGVDEEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITVRWDIGLNKKR
IAYFVFPKEDNELRLVPGDELRLRYPGDASHPSWQSVGHVIKLTSQEEVALELRVSQGVS
VDVNHGFSVDFVWKSTSFDRMQGAMKTFALDETSVSGYIYHHLLGHEVDMQIVRNALPRR
FGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP
SNVAVDQLAEKISATGLKVVRICAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL
KDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQ
ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQV
QYRMHPALSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISSS
GTSYLNRTEAANVEKIVTTFLKSGVVPNQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE
IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS
KQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDHRLFYGGGPGGVPNDTFG
SVASSPGADRRGARSRGPYMSPAPPNGAHKPGVHPAGYAMPRVPLSPYHSGPPSQPYAIP
TRGAVHGPVGTVPQMPQPGSRGFGGGRGSISAPIGSHLPHQQVGQSPIGSIASNYNFPAM
ENASSQPNAGGLLSQPGYVSNMTGQGPSQTFSDRFSMGGMSQDFLGDDFKSQGSHVPYAE
FSTQATQGGYGVDYITQGAQGGFPGSFLNQSSHAGYGRFATGNDFMSQEYMAHGSLGLFT
QAAFNEQSQDDSSQNLYGGGNARPLQTQSFLNPLYSQPLAHYNAQQPNMQNSQQQHSSQP
GQASQNQKIH
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaggcgaacaatctttacgagaccgcgtcccagcccgatgaggggaacgat
gcgtatacgttcttagaattccacacgcaaggcgaggaagattttgcttaccctgaattt
caggagctctcgcagcctattcgattgtcttcctctctgtggcctgcaccgtccgattct
attgctggttctgatactgctttctccactgagtcctctccgacaaacaaactccgcggt
ggaattagcaacagcaacaacaataatagcgctgccagcggtagtggtagtggtaataat
ggtagtaaggagggagtggtggaggcattggcggcagggatgagcggtctgaactttgaa
gagaccggtgatgacgaggtttttgattatgggaagggggattttgctgaacatgcttgc
aagtactgtgggatcaccaaccctgcatgtgttgcacggtgcaatgtgccatcatgtagg
aaatggttctgtaattcacgagggaatacatctggttctcacattgtaaatcatctggtg
agagcaaagcacaaggaagtgtgtcttcataaagatagtcctttgggagaaacaattctt
gagtgttacaactgtggatgccggaatgtcttccttcttggattcatatctgcaaagaca
gagagtgtggtggttcttctttgcagagaaccttgccttagttctaatgctttgaaggac
atgaattgggatctcagtcagtggtgcccgcttattgatgacagatgtttcttgcaatgg
ctgttgaaagtcccatctgaacaagagcagttgagggcaagacaaattagtgcccaacag
ataaataaaatcgaagagctttggaagacaaatcctgatgctaccttggaagatcttgag
aaacctggtgtggatgaggaacctcaacctgtagtactcaagtacgaggatgcataccag
tatcaaaatgtctttgcaccactcattaagcttgaagcggactatgacaagatgatgaaa
gagtctcaaagcaaagataacatcacagttcgatgggatattggcctaaataagaagcgt
attgcttactttgtctttccaaaggaagacaatgagttacggctagttcctggtgatgaa
ttaaggctgcgttatccaggagatgcatctcatccctcatggcagtctgtgggtcatgtg
ataaaattaacttcacaagaggaggttgcccttgagcttcgtgttagtcagggtgtttct
gttgatgtgaaccatggttttagtgtcgactttgtttggaaaagcactagttttgatcga
atgcaaggggccatgaaaacatttgcgctggatgaaacaagtgtcagtgggtacatttat
catcatttactgggccatgaagtagatatgcagatcgttcgaaatgcgttgcctcgtcga
tttggtgcaccgggtcttccagaactcaatgcatctcaggtttttgctgtgaagagtgtt
ttacaaaaacctataagtctcatacaaggtcctcctggaactggtaaaactgtcacctca
gctgcaattgtgtatcatatggcgaagcaaggccagggacaggttcttgtatgtgctcca
agtaatgtggctgtcgatcagctagctgaaaagataagtgccactggtttgaaggttgtc
agaatttgtgcaaagtcaagggaagctgttagttcccctgtcgagcatttaaccttgcat
tatcaggttagacatcttgacacttctgaaaagagtgaacttcacaagttacagcagctg
aaagatgaacaaggggaattgtccagcagcgatgagaaaaaatataaagctctaaaacga
gctactgaaagggagatatctcagagtgctgatgttatctgttgtacgtgtgttggagct
ggagatcctcgcttggcgaacttcagatttcgccaggtgcttatcgacgagtctacccag
gcaacagagcctgagtgtcttattcctttggttcttggagtgaaacaggttgttcttgtt
ggagaccattgccaacttggtccagtcattatgtgcaagaaagctgctcgtgctggtctt
gcacagtcgctatttgaaaggcttgtgctgcttggggttaaaccaattaggttgcaggtt
cagtataggatgcatcctgccctttcagagtttccctctaacagcttttatgaaggcact
cttcaaaatggagtgacaattaatgagaggcaatcaccaggcatagacttcccttggcct
gtaccaaatcgtcccatgtttttctatgtccagatgggacaagaggagataagttcaagt
ggaacatcctacctaaataggactgaagctgcaaatgttgagaaaattgtgactacgttt
ttgaaaagtggtgtagttcctaatcagattggtgttataaccccatatgaaggccagcgg
gcatacattgtgaattatatgtctcgcaatggtgctttacggcagcagctatacaaagaa
atcgaggtggctagtgtggactcatttcagggaagggaaaaggactacataattttgtct
tgtgtgaggagtaatgaacaccagggcattggtttcctcaatgatccacgccggcttaat
gttgccctcacacgtgctcgttatgggatagttatcctaggaaatccaaaagtattgagc
aaacaacccctctggaatggcttattgacacattacaaagaacatgaatgcttggttgag
ggacctctgaataatttaaagcagagcatggttcaatttcagaagcccaaaaagatatac
aatgatcaccgacttttctatggtggtggaccaggcggcgtccccaatgatacttttgga
tctgttgcgtcaagccctggtgctgataggaggggtgctcgctctaggggtccttacatg
tcacctgcaccgcctaatggtgctcataaacctggtgttcaccctgctggttatgcaatg
ccacgagtgcctctctccccataccacagtggccctccttctcagccttatgccattcct
acccgtggtgctgtacatggacctgttggaactgttcctcaaatgccacaacctggaagt
cgaggatttggtggtgggcgtgggagcatcagtgctcctattggtagccatcttccacat
cagcaggttgggcaatcccctattggaagtattgcatctaactacaatttcccagctatg
gagaatgccagcagccagccaaatgctggtggattattatctcagccaggatatgtttcc
aatatgacaggtcaaggacccagccaaacatttagcgaccgattctcaatgggtggcatg
tctcaggatttcttgggtgatgattttaaaagccagggttctcatgttccatatgctgaa
ttctctactcaggcaactcagggtggatatggtgttgactatattacacagggtgctcaa
ggtggatttcctgggagttttttaaaccagagctctcatgctggatatggtcgttttgca
acaggaaatgacttcatgtctcaggaatacatggcccatggttcacttggactatttaca
caggctgcgtttaacgaacaatctcaagatgattcttctcaaaacctctatggtgggggt
aatgcccgtccgcttcagactcagagtttcctgaatcccctctattcgcaaccattagca
cactacaatgctcaacagccgaacatgcaaaattcccagcaacagcattcatcccagcca
ggtcaagcctcccaaaatcagaaaatccactaa
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integrated database retrieval system
