Paraburkholderia kururiensis: U0042_02170
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Entry
U0042_02170 CDS
T10320
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
phun Paraburkholderia kururiensis
Pathway
phun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0042_02170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phun03019
]
U0042_02170
03400 DNA repair and recombination proteins [BR:
phun03400
]
U0042_02170
Enzymes [BR:
phun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0042_02170
Messenger RNA biogenesis [BR:
phun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0042_02170
DNA repair and recombination proteins [BR:
phun03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U0042_02170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Phage_Gene47
Tcp10_C
Motif
Other DBs
NCBI-ProteinID:
WQD80852
LinkDB
All DBs
Position
468180..469886
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AA seq
568 aa
AA seq
DB search
MRKTMREHFGIASLRDGQKDIIRSVIAGRDTLAVMPTGAGKSLCYQLPALHLPGLTLVVS
PLIALMKDQADKLAANHVQSVLVNSTVTRTEERKALASIAGGEVRIVFVTPERLASPAFI
DLLRQPDTPRLSLAVVDEAHCISQWGHDFRPAFLDIPVALDAVGRPPLLALTATATREVA
DDIVQSLRMREPNVVRTGIYRPNLQYRVVQTSAAGPQASSRATERKRAQLLTTLEAFEGA
GIVYTATVAEAERIRDWLAERHGSEAVSRYHGKLTARVREAEQERFMSGEARIMVATNAF
GMGIDRPDIRFIVHYQMPGSLDAYYQETGRAGRDGEAAHCVLLFDLNDRRIHQFFMAGRY
PDAALAQRVCDTLAASRESSPGGLTLAQLREALPEAGAKVGSNKLDVCVKMLTEQRVLMR
DRRRRIRLPDTAPARKAIEDAVQRFEEMSRRDKRVLERMIDYAQSGRCRWRLILEHFDDS
GKVERCGHCDNCLHPPTAHALPPAQRASLPNAARRRREAAQRGWQVGERVRVARYGQGEV
VLATGDQVVILFPNGTTRTFLAGYVKRA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaagacgatgcgcgagcacttcggtatcgcaagccttcgcgacggtcagaaggac
atcatccgcagcgtgattgcggggcgcgatacgctcgccgtcatgcccacgggcgcgggc
aagtcgctgtgctaccagcttccggcactgcatctgccggggctcacactggtcgtgtcg
ccgctcatcgcgctcatgaaagatcaggcggacaagctcgccgcgaaccacgtgcaaagc
gtgctggtgaacagtacggtgacgcgcacggaggagcgcaaggcgctggcgagcatcgcg
ggcggcgaagtgcgcatcgtgttcgttacgccggagcggctcgcgtcgcccgccttcatc
gatctgctgcggcagcccgatacaccgcgcctgagcctcgcggtggtggacgaagcgcat
tgcatctcgcagtggggccacgattttcgccctgcgtttctcgatattcccgtcgcgctg
gatgccgttggccgcccgccgctccttgccctgaccgccacggccacgcgcgaagtggcg
gacgacatcgtgcagtcgctgcgcatgcgcgagcccaacgtggtgcgcacgggcatctat
cggccgaatctgcagtaccgtgtcgtgcagacgagcgcggcgggaccgcaggcgtcgtcc
cgcgcgaccgaacgcaagcgcgcgcagcttctgacgacgctggaagcattcgagggcgcc
ggcatcgtctacacggccacggtcgcggaagccgaacgtatccgcgactggctcgccgaa
cggcacggcagcgaagccgtgtcgcgataccacggcaagctcacggcgcgtgttcgcgaa
gcggagcaggagcgcttcatgtcgggcgaagcacgcatcatggtggcgacaaacgcgttc
ggaatgggcatcgaccggcccgacatccgcttcatcgtccattaccagatgccgggcagc
ctcgacgcctactatcaggagacgggacgcgcggggcgcgacggcgaagcggcgcattgc
gtgctgctgttcgatctcaacgaccgccgcatccatcagttcttcatggcggggcgctac
ccggatgccgcactggcgcagcgtgtctgcgatacgctcgcggcttcgcgcgagtcgtcg
ccgggcgggctcacgcttgcacaattacgcgaggcgttgcccgaggcgggcgcaaaggtg
ggcagcaacaagctcgatgtctgcgtgaagatgctcaccgagcagcgtgtgctgatgcgc
gaccggcgccgccgcatcagactgcccgacaccgcgcctgcgcgcaaagccatcgaagac
gccgtgcagcgtttcgaggaaatgagccgtcgcgacaagcgcgtgctggaacgcatgatc
gattacgcgcaaagcggccgctgccgctggcggctgattctcgaacacttcgacgacagc
ggcaaagtggaacgctgcgggcattgcgacaactgtctgcatccgcccaccgcgcatgcg
ctgccgcccgcgcaacgcgcgtcgttgccgaatgctgcgcgccgccggcgcgaagcggca
cagcgcggctggcaagtgggtgaacgtgtgcgcgtggcgcgatacggccagggcgaagtc
gtgctggctaccggcgaccaggtggtcatcctgtttcccaatggcacgacgcgtacgttt
cttgccggctacgtgaagcgtgcctga
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