Paraburkholderia kururiensis: U0042_08045
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Entry
U0042_08045 CDS
T10320
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
phun Paraburkholderia kururiensis
Pathway
phun02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
phun00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
U0042_08045 (pdeR)
Enzymes [BR:
phun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
U0042_08045 (pdeR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_8
PAS_4
GGDEF_2
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-ProteinID:
WQD79621
UniProt:
A0ABZ0WQW0
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All DBs
Position
complement(1782961..1784964)
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AA seq
667 aa
AA seq
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MNDDQSDSLLYARFGTTSPCWRLSGDSNALELTPETGPGPADVAIALSGHQAAQIRQLTG
VTSHLTLDLRLFGEPVRLHLVGRKLGPNAWAGTASEWADTESVARDLVHGLSFAEQVVSE
VNSVVVIVDRAGRIQRFNRLAEELTGMKEEDVVGRNVWALFMSEEAGAASSQNISGFFNR
GVSYEVERWVKTVHGDRLFLFRNKFVQSGSGMNEQYLICSGTDITEERRAQTRLTELANT
DSLTGLPNRNAIHEKIRAAIADRSGDEAVGILFLDLDNFKRVNDHYGHLFGDRLLKDVSD
AIRACLDPGDTLARLGGDEFIVLAAPTTQAALEATAQRILERLRVPFSLGLVEVYTGCSI
GIALCPDHAGTLETMVRCADTAMYVAKDEGKRTWRVFSPEMNRKVAEYMWLDNNLRRGLD
EGQLTLCYQPKIALASGTVQAVEALVRWNSPERGQIMPGEFIRYAEESGLIGALGQWVMR
TAADQAAIWKERGLNLRVAINVSPRQLADTDVVRHFREALEQAKLDPCLIDIELTESCLI
EDEAAALERIQQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVHAIHEKPKSQ
ALVRSMVAVAQELNLKVVAEGIETVAEERFMQDLGVDYVQGYLYAHAMPAADFEAWLRER
QRPRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaccaatccgactcattgctgtacgcccgcttcggcacgacgagcccttgc
tggcggctttcgggtgacagcaacgcgctggaactcacgcccgagaccgggcccgggccc
gccgacgtcgccattgcgctttcggggcaccaggcggcgcagatccgccagctcacgggc
gtcacctctcacctcacgctcgacctgcggctcttcggcgaaccggtgcggctgcatctg
gtgggccgcaagctcggtcccaacgcatgggccggcacggcttcggaatgggccgatacc
gaatccgtggcgcgcgatctcgtgcacggactctcgtttgcggagcaggtggtttccgag
gtgaactcggtggtcgtgatcgtcgaccgggcgggtcgcatccagcgtttcaaccgcctt
gccgaagaactcaccggcatgaaagaagaagacgtggtgggccgcaacgtgtgggcgctg
ttcatgtccgaagaagcaggcgcggcgtcgagccagaacatctccggcttcttcaatcgc
ggggtctcgtacgaagtggaacgatgggtgaagaccgttcacggcgaccggctctttctc
tttcgcaacaagttcgtgcaaagcggcagcggcatgaacgagcaatacctgatctgctcg
ggcacggacatcaccgaagagcggcgcgcccagacgcggctcaccgaactcgcgaatacc
gattcgctcacgggcctgccgaaccgcaacgccattcacgagaagattcgcgcagcgatt
gccgaccggtccggggacgaggccgtcggcattctgtttctcgacctcgacaacttcaag
cgggtcaacgaccactacggccacctgttcggcgaccggctgttgaaagacgtgtccgac
gcgattcgcgcctgcctcgatccgggcgacacgctcgcgcgactgggcggcgacgagttc
atcgtgctggccgcgcccacgacgcaggccgcgctggaagccacggcgcagcgcatcctc
gagcgtctgcgggtgccgttcagcctggggctcgtcgaggtctataccggctgctccatc
ggcattgcactgtgccccgaccacgcgggcacgctggaaaccatggtgcgctgcgccgac
acggccatgtacgtggcgaaagatgaaggcaaacgcacgtggcgcgtgttttcgccggaa
atgaaccgcaaggtggccgagtacatgtggctcgacaacaacctgcgccgcggcctcgac
gaaggacagcttacgctttgctatcagcccaagatcgcgctcgccagcggcaccgtgcag
gccgtggaagcgctcgtgcgctggaattcacctgaacgcgggcagatcatgccgggcgag
ttcatccgttatgcggaggagtccggcctgatcggcgcgctcggccagtgggtgatgcgc
acggccgcggaccaggccgccatctggaaagagcgcggcctgaacctgcgcgtggccatc
aacgtgtcgccgcgacagcttgccgataccgacgtggtgcggcacttccgcgaggcgctc
gagcaggcgaagctcgacccgtgcctcatcgacatcgagttgacggaaagctgcctgatc
gaagacgaagcggctgcactggaacgcatccagcagttccggcaattgggtgcacaagtg
catctggacgacttcggtaccggctactcgtcgctctcccagctcggccgcattccgctc
gacgtcatcaagctcgaccgcagtttcgtgcatgccattcacgagaaaccgaagtcacag
gcactggtgcggtccatggtggccgtcgcacaggaactgaacctcaaggtggtggccgag
ggcatcgaaaccgtggcggaagaacgcttcatgcaggacctgggcgtggactacgtgcag
ggctatctctatgcgcacgccatgccggccgcggatttcgaggcatggttgcgggaaagg
cagcggccgaggttgattgcttga
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