Paraburkholderia kururiensis: U0042_11080
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Entry
U0042_11080 CDS
T10320
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phun Paraburkholderia kururiensis
Pathway
phun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U0042_11080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phun03400
]
U0042_11080 (mfd)
Enzymes [BR:
phun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0042_11080 (mfd)
DNA repair and recombination proteins [BR:
phun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U0042_11080 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WQD80173
LinkDB
All DBs
Position
2469791..2473300
Genome browser
AA seq
1169 aa
AA seq
DB search
MSDTAASSSPPSSPSRDACPVALVKSGQRFAFDGTHGSSDALLIARYHLAYRDKIPLLAV
VCASAVDAQRLSQEIAFFAPNARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRC
DILLVPATTALYRMPPASFLAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYC
VRGSLLDLYPMGSPLPYRIDLFDDQVDSIRAFDPDSQRSLYPVRDVRLLPGREFPFDEAA
RTAFRSRWREVFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFEETATLFHYLPQAAHLVF
SGDLDVAIRRFTADTKQRYSFLSHDRDRPILEPQRLFLSDDDFFTLAKPFARLVLPAASG
GGWTAPLPGLALDRHADDPVAALRAWLATTPNRVLFAAESAGRRETIAQLLADNALRPAQ
TDSFEDWLTGDAPFSLGVAPLANGFIVPGEGLAIITETELYGTLARRTGRRRQEQASNVD
SMVRDLSELKVGDPVVHAQHGIGRYCGLITMDLGEGETEFLHLEYAGDSKLYVPVSQLHV
ISRYSGADPESAPLHALGSGQWEKARRKAAQQIRDTAAELLNLYARRAARAGHAFKLEPR
DYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMG
GKQVALLSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVNAAIQQINDGTVDIVI
GTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALE
GLRDFSVIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRAM
LEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPTANTILIHRA
DKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMH
DLEIRGTGEVLGDKQSGEIQEIGFQLYTDMLNDAVKALKEGREPDLNAPLAATTEINLHA
PAILPADYCGDVQERLSLYKRLANCEHDDAIDSIQEELIDRFGKLPPQAHALVETHRLRL
AARPLGISKIDAGEAVIGLQFVPNPPIDAMRIIEMVQKNRHIKLAGQDKLRIETRSPDLA
VRVATVKETLRALGTPARHAAAGAATSVR
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataccgccgcttcatcgtcgcccccgtcttctccgtcgcgagacgcctgccct
gtcgcgctcgtgaagagcgggcagcgcttcgcgttcgacggcacgcacgggtcgtccgat
gcgctcctgatcgcccgctaccacctcgcctaccgcgacaagatcccgctgctcgcggtg
gtctgcgcgagcgccgtggacgcgcagcggctctcgcaggaaatcgcgttcttcgccccg
aatgcgcgcgtgcggctgctgccggactgggaaacgctgccctacgacacgttttcgccg
caccaggatctcgtctccgagcggctcgccacgctgcacgacctgggcgaaggccgctgc
gacatccttctcgtgcccgccaccacggcgctgtaccgcatgccgcccgcctcgttcctc
gcggcctacacgttctcgttctcgcagggcgagcgtctcgacgaagcgaagctcaaggcg
cagctcacgctcgccggctacgagcacgtaagccaggtcgtgcgtcccggcgagtactgc
gtgcgcggctcgctgctcgacctctatccgatgggctcgccgctgccgtaccgcatcgac
ctgttcgacgaccaggtggactccatccgcgcgttcgaccccgattcgcagcgcagcctt
tatcccgtgcgcgacgtgcgcctcttgcccggccgcgaatttccattcgacgaagccgcg
cgcaccgcgtttcgcagccgctggcgcgaggtgttcgaaggcgacccgagccgcgcgtcg
atctacaaggacatcggcaacggcgtgccgtcagcgggcatcgagtactacctgccgctc
ttcttcgaagagacggccacgctgttccattacctgccgcaagcggcgcatctcgtgttc
tcgggcgacctcgacgtcgccatccgccgcttcaccgccgacacgaagcagcgctacagc
ttcctttcgcacgaccgcgaccggccgattctggaaccccagcggctgttcctttccgac
gacgacttcttcacgctcgccaagccgttcgcacgcctcgtgctgccggccgcgagcggc
ggcggctggaccgcgccgctgccggggcttgcgctcgatcgccacgccgacgaccccgtc
gccgcgctgcgcgcctggcttgccaccacgccgaaccgcgtgctgttcgcggccgaatcg
gcgggacgtcgcgagaccatcgcgcaactgctcgccgataacgccctgcgccccgcgcag
accgacagcttcgaagactggctcacaggcgacgcgcccttttcgctcggcgtcgcgccg
ctcgcgaacggctttatcgtgcccggcgaagggctggcgatcatcaccgagaccgagctg
tacggcacgctcgcgcgccgcaccggccggcgccgccaggagcaggcgagcaacgtcgat
tcgatggtgcgcgacctctccgaactcaaggtgggcgaccccgtggtccatgcgcagcac
ggcatcggccgctactgcgggctcatcaccatggacctcggcgaaggcgaaaccgagttc
ctgcatctcgaatacgcgggcgacagcaagctttacgtgccggtgtcgcagctgcacgtc
atctcgcgctacagcggcgcggaccccgaaagcgcgccgctgcacgcgctcggctcgggc
cagtgggaaaaggcgcggcgcaaggctgcgcagcagattcgcgacactgcggccgagctg
ctcaacctctatgcgcgccgcgccgcgcgtgcgggccacgcgttcaagctggaaccgcgc
gactacgtgaagttcgccgaaagcttcggcttcgaggaaacgccggatcaggcggccgcc
atcgccgccgtgatcggcgacatgacgagcggcaagccgatggaccgcctcgtgtgcggc
gacgtgggcttcggcaagaccgaagtcgcgctgcgcgcggccttcatcgccgtcatgggc
ggcaagcaggtggcgctgctctcacccaccacgctgctcgcggaacagcacacgcagacc
ttcacggaccgcttctccgactggcccgtgcgcatcgccgaactgtcgcgcttcaagtcg
acgaaggaagtcaacgccgcgatccagcagatcaacgacggcaccgtcgacatcgtgatc
ggcacgcacaagctgctctcctccgacgtgcagttcaagcggctggggctcgtcatcatc
gacgaagagcaccgcttcggcgtgcgccaaaaggaagcgctcaaggcgctgcgcgccgag
gtggatgtgctcacgctcacggccacgccgattccgcgcacgctcggcatggcgctggaa
ggcctgcgcgacttctcggtcatcgccacggcgccgcaaaagcgcctcgccatcaagacg
ttcgtgcgccgcgaggaagacggcgtgattcgcgaggcgatgctgcgcgagctgaagcgc
ggcggccaggtgtacttcctgcacaacgaagtggagaccatcgagaaccgccgcgcgatg
ctcgaagccctcgtgcccgaggcgcgcatcgcggtggcgcacggccagatgcacgagcgc
gaactcgaacgcgtgatgcgcgacttcgtcgcgcagcgcgccaacgtgctgctgtgcacg
accatcatcgagaccggtatcgatgtgcccacggccaacaccatcctgatccaccgtgcc
gacaagttcgggctcgcgcagttgcaccagttgcgcggacgcgtgggccgctcgcatcac
caggcctattcgtatctgctggtgcacgatccgcaggggctcacgaagcaggcgcagcgg
cgcctcgaagcgatccagcagatggaggaactgggtgcgggcttctacctcgccatgcac
gacctcgaaattcgcggcacgggcgaagtgctgggcgacaagcagtcgggcgaaattcag
gagatcggcttccagctctacacggacatgctcaacgacgccgtgaaggcgctcaaggaa
ggccgcgaaccggacctcaacgcgccgctcgccgcaaccaccgagatcaacctgcacgcg
cccgccatcctgcccgccgactattgcggcgacgtgcaggaacggctctcgctctacaag
cgcctcgcgaactgcgaacacgacgacgcgatcgacagcatccaggaagagctgatcgac
cgcttcggcaagctgccgccgcaggcgcacgcgctcgtcgagacgcaccgcctgcgcctt
gccgcgcggccgctcggcatttcgaagatcgacgcgggcgaagccgtgatcggactgcag
ttcgtgccgaacccgcccatcgacgccatgcggatcatcgagatggtgcagaagaaccgg
cacatcaagctcgcgggccaggacaagctgcgcatcgaaacacgcagccccgacctcgcg
gtgcgcgtggccaccgtcaaggaaacgctgcgcgcgctcggcacgccggcgcgtcatgcg
gctgcgggggcggcgacgtcggtgcggtaa
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