Paraburkholderia kururiensis: U0042_11225
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Entry
U0042_11225 CDS
T10320
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
phun Paraburkholderia kururiensis
Brite
KEGG Orthology (KO) [BR:
phun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phun03009
]
U0042_11225 (rlmD)
Enzymes [BR:
phun01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
U0042_11225 (rlmD)
Ribosome biogenesis [BR:
phun03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
U0042_11225 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_23
Methyltrans_SAM
TRAM
RrnaAD
Methyltransf_15
Methyltransf_11
MTS
PCMT
N6_N4_Mtase
Methyltr_RsmB-F
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
WQD80195
LinkDB
All DBs
Position
complement(2508731..2510164)
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AA seq
477 aa
AA seq
DB search
MSQAAFPRRSRKEKTAAGAAGAAQGASSQTAFPAPTLEIESLDMEARGVGRTVTDDGQPG
KVIFVEGALPGERVTYSSYRKKPSFEQAQVVDVLRESVIRTVPQCKFFGTCGGCSMQHLD
VRAQIAVKQRVLEDNLQHLAKLRAETMFRPIHGPSWGYRYRARLTVRNVPKKGGVLVGFH
ERKSSYVADMTSCEVLPPHVSAMLVPLRHLVEGLSIKERMPQIELAVGSSVTALVLRILE
PINAADEALLRAFADEHNVQFWLQPKGPDTVFPFYPLDAQLDYTLPEFGIRMPFKPTDFT
QVNHQINRVLVGRALRLLAPAAGDRVLDLFCGIGNFTLPLARLAREVVGIEGSEALTTRA
LANAKENGVDGHTSFACRNLFEVTADDMRALGHFDKFLVDPPREGALAVCKALAEIAQSG
EGPLPSRIVYVSCNPATLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFERD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccaagctgctttcccccgtcgttcccgaaaagaaaagaccgctgccggcgctgcg
ggtgccgcacaaggcgcgtcgtcgcaaaccgcgtttccggcgccgaccctcgagatcgag
tcgctcgatatggaggcgcgcggcgtaggccgcaccgtgaccgacgacggccagcccggc
aaggtgatcttcgtcgaaggcgcgttgccgggcgagcgtgtcacgtactccagttaccgc
aagaagccgagcttcgagcaggcccaggtggtagacgtactgcgcgaaagcgtcatccgc
accgtgccgcagtgcaagttcttcggcacctgcggcggttgctcgatgcagcatctcgac
gtgcgggcgcagatcgccgtcaagcagcgggtgctcgaagacaaccttcagcatctcgcg
aagctgcgcgccgagacgatgttccggcccatccacggcccgtcgtggggttaccgctat
cgcgcgcggctcaccgtgcgcaacgtgccgaagaagggcggcgtactggtcggctttcac
gagcgcaagagcagctacgtcgccgacatgacgagctgcgaggtgctgccgcctcacgtc
tcagcaatgctcgtgccgctgcgccacctcgtggaggggctctcgatcaaggaacgcatg
ccgcagatcgaactcgcggtcggctccagcgtaacggcgctggtgctgcgcatcctcgag
ccgatcaatgccgcggacgaggcgctgctgcgtgctttcgccgacgagcacaacgtgcag
ttctggctgcagcccaaaggaccggacaccgttttcccgttctatccgctcgacgcgcag
ctcgactacacgctgcccgagttcggcatccgcatgccgttcaagccgaccgacttcacc
caggtgaatcaccagatcaaccgtgtgctggtgggccgtgcgttgcgcctgctggcgccg
gcggcaggcgaccgcgtgctcgatctgttctgcggcatcggcaacttcacgctgccgctc
gcgcggctcgcacgcgaggtggtgggcatcgaaggaagcgaggcgctgaccacgcgcgcg
ctcgccaatgcgaaggaaaacggtgtggacggacacacgtcgttcgcctgccggaacctg
ttcgaggtaacggccgacgacatgcgcgccctcggacatttcgacaagttcctcgtcgat
ccgccgcgcgaaggggcgctggcggtgtgcaaggcgctcgcggagatcgcgcagtcgggc
gagggtccgctgccgtcgcgcatcgtctacgtgtcgtgcaatcccgctacgctcgcgcgc
gacgcggggctgctcgtgcacgaagccggctaccggctcaagggcgccggcgtggtgaac
atgttcccgcatacgtcgcacgtcgaatcgatcgcgctgttcgagcgggattga
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