Paraburkholderia kururiensis: U0042_21490
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Entry
U0042_21490 CDS
T10320
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phun Paraburkholderia kururiensis
Pathway
phun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0042_21490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phun03019
]
U0042_21490
Enzymes [BR:
phun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0042_21490
Messenger RNA biogenesis [BR:
phun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0042_21490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF8086
Sacchrp_dh_NADP
HI1480
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WQD76641
UniProt:
A0ABZ0WH12
LinkDB
All DBs
Position
complement(4777568..4779157)
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AA seq
529 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTSPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLSTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALRRGVDIVVATPGRLLDHMQQKTIDVSHLEILVLDEADRMLDMGFIHDIKRVLAKLPAK
RQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKVHPVDRDRKRELLTHLI
RQHNWFQVLVFTRTKHGANRLAEQLTKDGITALAIHGNKSQSARTRALAEFKDGTLQVLV
ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI
ERLIKRPVPQEVIPGFEPDPNAKPEPILRRGQGGGRSQPREGQARPQGGAPRAPKKEAPR
EPARGTAHAAKPAQKGAAHPRGNAQGSTARAGASANGNSNGHARTQEPRTAKPVKPGHAA
SNGHGAGNVRKDAPRRDQDSGAARSARRPQGNPGALLGGKPRGNASGNR
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgactctctcggcttgtccgaaccgctcgtccgcgccgtacacgaactcggc
tatacgtctcccactccgatccagacccaggccattcccgccgtgctcggcggcggcgac
ctgctcgccggcgcacagaccggcaccggcaagaccgccggcttcacgctgcccatcctg
cagcgcctttccaccatgccgcctgcgccgggcggcaaacgcgtcgtgcgcgcgctgatc
ctcacgccgacgcgcgaactcgcggctcaggtggaagagagcgtgcgcgcctacggcaag
tatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcagatcgat
gcgctcaggcgcggtgtggatatcgtcgtggccacgccgggccgcctgctcgatcacatg
cagcagaagacgatcgacgtctcgcatctcgagatcctcgtgctcgacgaggccgaccgc
atgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccggcgaag
cgccagaacctgctgttctcggccaccttctccgacgagatcaaggcgctcgccgacaat
ctgctcgactcgcccgcgctgatcgaagtggcccgtcgcaacacgaccgcggagacggtc
gcgcagaaggttcaccccgtggaccgcgatcgcaagcgcgaactgctcacgcacctgatc
cgccagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaaccgg
ctcgcggagcagctcacgaaggacggcatcaccgcgctggccattcacggcaacaaaagc
cagtccgcgcgcacgcgcgcgctggccgagttcaaggacggcacgcttcaggtgctggtg
gccacggacatcgcggctcgcggcatcgacatcgatcagctgccgcacgtcgtgaacttc
gacctgccgaacgtgccggaagattacgtgcaccgaatcggccgcacggggcgcgcgggc
gcgacgggcgaggcggtgtcgctcgtctgcgtggacgagctgcaactgctgaaggacatc
gagcggctcatcaagcgcccggtgccgcaggaagtgattcccggcttcgagccggatccc
aacgcgaagccggaaccgatcctccgccgcggccagggcggcggacggtcccagccgcgc
gaagggcaagcgcgtccgcaaggcggggcaccgcgcgcaccgaaaaaagaggccccgcgg
gaacctgctcgcggaacggcgcacgccgccaagcccgcgcaaaagggcgccgcgcatccg
cgtggcaacgcacagggcagcacggcgcgagccggcgcgagcgcgaatggaaacagcaac
ggccacgcgcgcacgcaagagccgcgtaccgcgaagccggtcaagccaggacatgccgca
tcgaacggacacggcgccggcaacgttcgcaaggacgcccctcggcgcgatcaggacagc
ggcgcagcgcgcagcgcccgcaggccgcaaggcaaccccggcgcattgctgggcggcaag
ccgcgcggcaacgcatcgggcaatcgctga
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