Pseudomonas hamedanensis: HU739_000235
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Entry
HU739_000235 CDS
T07661
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phv
Pseudomonas hamedanensis
Brite
KEGG Orthology (KO) [BR:
phv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phv03032
]
HU739_000235 (topA)
03400 DNA repair and recombination proteins [BR:
phv03400
]
HU739_000235 (topA)
Enzymes [BR:
phv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU739_000235 (topA)
DNA replication proteins [BR:
phv03032
]
Prokaryotic type
DNA Topoisomerases
HU739_000235 (topA)
DNA repair and recombination proteins [BR:
phv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU739_000235 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXI17455
UniProt:
A0A9E6P0X7
LinkDB
All DBs
Position
48313..50946
Genome browser
AA seq
877 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPEHGWKAQYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSEPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGST
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDANTTPSKLAGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKSVLDEFYGDFKKKLEVAENPDNGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKRSAKAKAE
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagcctgctgccaagcgcggcaaggctgctgcaggcgaa
ggtccggtgctctcgccgaaagagaaagcgcgcaagcagctggtctcgcgtatgggcgtc
gatcccgagcacggctggaaagcccagtacgagatccttcctggcaaggaaaaggtcatc
gaggagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagcgttctccgag
ccgggcgagctggacatcgatcgtgtcaacgcgcagcaggcgcggcgcttcctcgatcgc
gtggtcggctacatggtttcgccgctgctgtgggccaagatcgcccgcggtctgtctgct
ggtcgcgtgcaatcggttgccgtgaagctggtggtcgaacgcgagcgtgagattcgtgcc
ttcaatccggaagaatactgggaagtgcatgccgatctcggcaccgccaaaggctcgact
gtgcgtttcgaagtcgcacgcgagaaaggcgaagccttcaagccgctgaacgaagcccag
gccatggccgcgctggagaagctcaaggcctccagctacagcatcgtcaagcgcgaagac
aagccgaccagcagcaagccgtcggcgccgttcatcacctcgaccctgcagcaagccgcg
agcaaccgcctgggcttcggcgtgaagaaaaccatgatgatggcccagcgtctgtatgaa
gctggctacatcacgtatatgcgtaccgactcgaccaacctctcggctgacgccgtggcg
atggcgcgtacctacatcgaagacgagttcggcaagaagtacctgccagagacgccgaac
gtctatagcagcaaagaaggcgcacaagaggctcacgaagcgattcgcccgtccgacgcc
aacaccacgccgagcaagcttgcgggcatggaacgtgacgctgagcgtctctacgagctg
atctggcgtcagttcctcgcttgccagatgttgccggcgcagtacctgtcgaccacagtc
agcgtcggcgctggcgacttcgagctgcgcgccaagggccgtatcctcaagttcgacggt
tacactcgcgttatgccgcagattgccaagccgggcgatgacgacgttctgccggacatg
gcgcagggcgacgtgatgaagctgatcaagcttgatccctcccagcactttaccaagccg
ccggcccgttactcggaagccagcctggtgaaggaaatggaaaagcgcggcattggccgt
ccttcgacgtacgcagcgatcatctcgaccattcaggaccgcggttacgtgaccctgcat
aaccgtcgtttctattcggaaaagatgggtgacatcgtcaccgagcgtttgtccgagagc
ttctcgaacctgatggactacggcttcaccgccggcatggaagagaatctcgatgacgtg
gcgcagggcgagcgcgactggaaaagcgtactggacgagttctacggcgacttcaaaaag
aaactcgaagttgcggaaaacccggacaatggcatgcgcgccaaccagccggtgatgacc
gatatcccgtgcacaacgtgtggtcgtccgatgcagattcgcacggcctccactggcgtg
ttcctcggctgctcgggttacagcctgccgccgaaagagcgttgcaaggccaccgtcaac
ctggtgccgggcgacgaaatcgctgcggacgatgagggtgaatcggaatctctggtactg
cgtggcaagcatcgctgcccgatctgcagcacggcgatggacgcttatctgctggatgag
aagcgcaagctgcacatctgcggtaacaacccggattgcgccggttatgagattgaagag
ggcagctatcgcatcaagggctatgaaggcccgagcctggaatgcgacaagtgtggcagt
gagatgcagctcaagaccggccgtttcggcaagttcttcggctgcaccaatccgacctgc
aagaacacccgcaagctgctcaagagcggcgacgcggcaccgcccaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcctgcgtgacggtgcg
tccggtctgttcctggcggccagccagttcccgaaaaaccgcgagactcgcgctccgctg
gtgatcgagatcctgccgcacaaagatgagatcgatccgaagtatcacttcctgtgcgag
gcaccacagaaagatcctgacggtctgccggcggtcattcgctacagccgcaagaccaag
gagcaatacgtgcagaccgaagtcgacggcaagcctacgggctggaaggcgtactacgac
ggtggcaagtggacggtcgaagacaagcgcagtgccaaggcgaaggctgagtaa
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