Pseudomonas hamedanensis: HU739_021430
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Entry
HU739_021430 CDS
T07661
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phv
Pseudomonas hamedanensis
Pathway
phv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU739_021430 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phv03019
]
HU739_021430 (rne)
03009 Ribosome biogenesis [BR:
phv03009
]
HU739_021430 (rne)
Enzymes [BR:
phv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HU739_021430 (rne)
Messenger RNA biogenesis [BR:
phv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU739_021430 (rne)
Ribosome biogenesis [BR:
phv03009
]
Prokaryotic type
rRNA processing factors
HU739_021430 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXI16456
UniProt:
A0A9E6NYX2
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All DBs
Position
4912034..4915285
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAPAAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPAAPVAVEKPAAERPARNEERRNG
RQQSRNRNGRRDDERKPREERAPREERAPREPREERQPREAREVREPRETRNEAPAAREE
RAPRAPREERAPRAPREDRKPRGEREERVRELREPLDAVPAAAAAAVTAEERPVRQPREE
RAPRPPREERQPRAEQAAAAVAEEEVNTNNEEQLPEDGQDNAEGDRPRRRSRGQRRRSNR
RERQRDANGNVIEGSEESESGENAESPSTADLAAGLAVTAAVASSVISAPAEAQAHEQAE
RATAATLESAPVEAPVVEATTPVQVTAAPEVEVAPAREAQPQVEAAAEPEAVAEAPTAIT
EPAVETVAETVTETVREVREEQTAFNWVAEPAVTEAPAPVAEAEVPPAMVSEPVVAAAEP
APVVEAPVVEAPAVIEAPAPVVEAPAPVSALTPNGRAPNDPREVRRRKREEERLQKEAEL
AAAAAPVAAEPAAAADVVEAAPAPVAEQASVEAVIAEAPRSVQDAVEQREEAQEKEHEPK
PLV
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaaaaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgagaaagaagaacgtggcaacaagggcgccgccctgaccactttcatcagcctg
gccggtcgttacctcgtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggcgaagaacgcaacgaactgcgtgaagcgctgaacggtctggtcgctccagcc
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtc
gaattgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgcccgcgtgcagatcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatcgctcggcgaaagcagcggcatcgtc
tgccctcgctgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagcgctgaaagaccgcactgccgaagttcgcgcccaggtg
ccgatcccggttgcagccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgcgcgcatcgtcattctgccgaacgatcacctcgagacgccgcacttc
gaagttcagcgcctgcgtgacgacagcccggaagctgcgacgaaccagtccagctacgaa
atcgcggcagccgctgccgaagtcgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaagccgcggtcaagaccgcgccagctcgcgccaatgcgccggtgccaacc
gaagtcgcgcctgccgcacctgctccggcaccggttgccgcacctgagccgagcctgttc
aaaggtctggtgaagtcgctggtcagcctgttcgccaccaaggaagagcctgctgcaccg
gttgccgtagaaaaaccggctgccgagcgtccagcccgcaatgaagagcgtcgcaacggt
cgtcagcagagccgcaaccgtaacggtcgccgcgatgacgaacgcaagccgcgcgaagaa
cgtgccccgcgtgaagaacgcgcaccacgtgagccgcgtgaagagcgtcaaccacgtgaa
gcccgcgaagtgcgcgagcctcgtgaaacccgcaacgaagcaccggcagcccgcgaagag
cgcgcgccacgtgccccgcgtgaagaacgtgcaccgcgtgctccgcgcgaagaccgcaag
ccacgtggcgagcgtgaagaacgcgtgcgtgaactgcgcgagccactggacgccgtgcca
gccgcagccgctgctgccgtgaccgctgaagagcgtccggtccgtcagccacgcgaagag
cgcgccccgcgtccgccgcgtgaagagcgtcaaccgcgcgccgagcaggccgcagctgcc
gtcgctgaagaagaagtcaacaccaataacgaagagcaactgccggaagacggtcaggac
aacgccgaaggcgatcgtccacgtcgtcgctcccgtggtcagcgtcgtcgcagcaatcgt
cgtgaacgtcagcgcgatgccaatggcaacgtgatcgaaggttcggaagaatccgagtcc
ggcgaaaacgctgaaagcccaagcactgccgatctggccgccggcctggcagtcaccgcc
gctgttgccagcagcgtgatcagtgctccggctgaagcccaggctcacgagcaggctgaa
cgcgccaccgctgctactctggaaagcgctccagtcgaagcgccggttgtcgaagcgact
actccggtgcaagtgactgccgcgccagaagtcgaagtggcccctgctcgcgaagctcaa
cctcaggttgaagcggctgccgaacctgaagctgtcgctgaagcgccaacggcaatcact
gaaccagcggttgaaaccgtagctgaaacagtgaccgagaccgtgcgtgaagttcgcgaa
gagcagactgcgttcaactgggttgccgagccagctgtcaccgaagctccagcgccggtc
gctgaagccgaagtaccgccagccatggtttccgagccagtagtcgccgcggctgaacca
gcgccagtggttgaggcaccggttgtcgaagcgcctgccgttatcgaagcgccagctccg
gtagttgaagcgccggctccagtcagcgccctgacgccaaatggccgcgcgcctaacgac
ccgcgtgaagtgcgtcgtcgcaagcgtgaagaagagcgtctgcagaaggaggccgaactg
gctgccgctgctgctccggtcgccgccgaacccgccgctgcggctgacgtggtcgaggca
gcgcctgccccggtcgctgagcaggcatcggttgaagcggtaatcgctgaagcaccacgc
tccgttcaggacgcggttgaacagcgcgaagaggctcaggaaaaagagcacgagcctaaa
ccgcttgtctga
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