Pseudomonas hamedanensis: HU739_025285
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Entry
HU739_025285 CDS
T07661
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phv
Pseudomonas hamedanensis
Pathway
phv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU739_025285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phv03019
]
HU739_025285
Enzymes [BR:
phv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU739_025285
Messenger RNA biogenesis [BR:
phv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU739_025285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QXI17162
UniProt:
A0A9E6NZA4
LinkDB
All DBs
Position
complement(5765829..5767169)
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AA seq
446 aa
AA seq
DB search
MTFASLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLAMEGPKVSANSARALILVPTRELAEQVHESVRQYAENLPLRTYAVYGGVSINPQMMK
LRGGVDVLVATPGRLIDLFRQNALKLDQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR
QTLLFSATFSDDIRLLAGQMLNDPLSVEVSPRNVAANTVKQWIVTVDKKRKAELFVHLMR
KNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNMLSAIE
MLTRQTLKRQNEPDFEPEHRVPDTDASGQVIKKPKKPKKPKASGGGGGKRNLGKWVDSGE
TSAPEPSIKPVRKVPVFNTGPRKRKP
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgcctcccttggcctgatcgaacccttgctgcgctccctcgagacgctcggc
taccagaccccgacgccggtgcaggcgcaagccattccggcggtgctggccggtcgtgac
ctgatggccgcggcccagaccggcactggcaagaccgccggtttcgctttgccgctcttg
cagttgctggccatggaagggccgaaagtcagcgccaactcggcgcgtgcgctgattctg
gtgccgacccgcgagctggccgagcaggttcatgagtctgtgcgccagtacgccgaaaac
ctgccgctgcgcacctatgcggtgtacggcggtgtcagcatcaacccgcagatgatgaag
ctgcgcggcggcgtcgatgtgctggtcgccacgcccggtcgcttgatcgacctgttccgc
cagaacgcgctcaaactcgatcagttgcaaacgctggtgctggatgaagccgatcgtatg
ctcgacctgggcttctccgaagaactggcgaatatttaccgcatgctgccgaaaaagcgc
cagaccctgttgttctccgcaaccttctccgatgacatccgcttgctcgccgggcagatg
ctcaacgatccgctgagcgtcgaagtcagcccgcgcaacgttgccgccaacaccgttaaa
cagtggattgtgacggtggacaagaagcgcaaggccgaactgttcgtgcacctgatgcgc
aagaacaagtggaagcaggtgctggtgttcgccaagacccgcaacggtgtcgatgcactg
gtggaaaaacttcagggcctgggcgtgaacgctgacggtatccatggcgacaaaccacag
gcgactcgccagcgcgcgctggaccgtttcaaactcagcgaagtgcagattctggtggcg
accgacgtcgccgcccgcggtctggacatcgaagacctaccgctggtggtcaacttcgac
ctgccgatcgtggccgaggactacattcaccgcatcggtcgtactggccgtgcgggcgct
acgggcgaggcgatctcgctggtgtgcgccgatgaagtaaacatgctgtcggcgattgaa
atgctgactcgccagaccttgaagcgccagaacgaaccggacttcgagcctgaacatcgc
gtgccggacaccgatgccagcggtcaggtgatcaaaaagccgaagaaaccgaagaagccg
aaagcgtcgggcggtggcggcggtaagcgcaacctgggcaagtgggtggacagcggcgag
acctcggcaccggaaccatcgatcaagcctgtgcgcaaggtgccggtctttaatactggg
ccgcgtaaacgcaaaccttaa
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