Phycicoccus sp. HDW14: G7075_04015
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Entry
G7075_04015 CDS
T06484
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phw
Phycicoccus sp. HDW14
Pathway
phw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7075_04015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phw03019
]
G7075_04015
03009 Ribosome biogenesis [BR:
phw03009
]
G7075_04015
Enzymes [BR:
phw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G7075_04015
Messenger RNA biogenesis [BR:
phw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G7075_04015
Ribosome biogenesis [BR:
phw03009
]
Prokaryotic type
rRNA processing factors
G7075_04015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QIM20499
LinkDB
All DBs
Position
808949..811858
Genome browser
AA seq
969 aa
AA seq
DB search
MASENDPTTPQPADLPTLPVETVAPAGDDTSPAEAAPRKRAARKRATKKTAAPAAAEEQA
GTDEAAPVKKTGRKRAAKKTAEPTAQAPVEEIPAAQADATTADDDAPPVAPRKPAKKAGR
RAAKAAAAPAPVVEEALAPADEPVEDEDEATDEPATGPAFGLLFQAPETTVAPRRRRATS
PVQAPAEAPAEAPAPAEPAADAAPAADEQHDGDEPAEPDTTSDTAPEADGDAADGEGGSR
RRRRGGRGRRGRAKGEDEQGQASGDVESDSDDDAPAEEPKASGRRGGRGAAAQDDDADGE
SASSRRRRRRRRSGSGTAEGDDPPGTVTRVREPRSERDEPTAVKGSTRLEAKKQRRREGR
EAGRRRTIITEAEFLARRESVERSMIVRGRDGRTQIGVLEDGVLVEHYVSRETTASMAGN
VYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDAAGLEVNQAKRIENALSSGDTVLV
QVTKDPIGHKGARLTSQISLPGRYVVYVPEGSMTGISRKLPDTERARLKAILKEVVPDGA
GVIVRTAAEGASEAELKADVERLTKQWERIVSKAESAKQKKSGGGGAPALLHGEPDLTIR
VIRDVFTEDFASLVVSGEKAWGEVSEYVEDVAPDLAARVSRWTSEDDVFAAHRIDEQISK
AMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRL
RDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGL
IEVFSEPCEHCGGRGIVVQSEPVERGNGGGSGDGGGSSRSGRGRGRGGSSGGSGGSGGSA
PEPEAPKQGNGGPSAAQIAAAAHAAALKHSESPEVADEVAAQVAAELGAAAEPVAVDDAP
EPVVEPVADPVVEAVVESAPEPAPEPVEEPAPARRTRRKRGRVVAPAGPPSAATASTAPA
DPAEQPAGE
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgagaacgacccgaccaccccccagcccgccgacctcccgaccctgccggtc
gagacggtggcgccggccggcgacgacacctcgcccgcggaggcggcccccaggaagcgg
gccgcccgcaagcgcgcgacgaagaagaccgccgcccccgccgctgcggaggagcaggcc
ggcaccgacgaggccgcgcccgtgaagaagaccggccgcaagcgggccgcgaagaagacg
gcggagccgaccgcgcaggccccggtcgaggagatccccgccgcgcaggccgacgccacc
accgctgacgacgacgccccgccggtcgccccgcgcaagcccgcgaagaaggccggccgt
cgcgccgccaaggccgccgccgcgccggcccccgtcgtcgaggaggccctcgcgcccgcc
gacgagccggtcgaggacgaggacgaggcgaccgacgagccggccaccggccccgccttc
ggcctcctgttccaggcccccgagaccaccgtcgccccgcgccgccgccgtgccacctca
ccggtgcaggcacccgccgaggcccccgccgaggcacccgcgccggccgagccggccgcg
gacgccgcgccggccgccgacgagcagcacgacggcgacgagccggccgagccggacacc
acgtccgacacggcccccgaggccgacggcgacgccgccgacggcgagggcggctcccgc
cgtcgtcgccggggtggtcgtggccgtcgcggccgcgccaagggcgaggacgagcagggc
caggcgtcgggcgacgtcgagtccgactccgacgacgacgcccccgccgaggagcccaag
gcctccggtcgccgcggtggccggggtgcggcggcgcaggacgacgacgccgacggcgag
tccgcctcgagccgtcgccgccgtcgtcgccggcgcagcggctccggaaccgccgagggc
gacgacccgcccggcaccgtcacccgggtccgggagccgcgctcggagcgcgacgagccg
accgccgtcaagggctcgacccgcctcgaggccaagaagcagcgccgccgcgagggccgc
gaggccggccggcgccgcacgatcatcaccgaggccgagttcctcgcccgccgcgagagc
gtcgagcgcagcatgatcgtccgcggccgcgacggccgcacccagatcggcgtcctcgag
gacggcgtcctcgtcgagcactacgtctcgcgcgagaccaccgcctcgatggccggcaac
gtctacctcggccgggtccagaacgtcctgccctcgatggaggccgccttcgtcgacatc
ggcaagggccgcaacgccgtgctctacgccggcgaggtcaactgggacgccgcgggcctc
gaggtcaaccaggccaagcgcatcgagaacgcgctgtcctccggcgacaccgtgctcgtc
caggtcaccaaggacccgatcgggcacaagggcgcgcgcctcacctcgcagatcagcctg
cccggtcgctacgtcgtctacgtgcccgagggctcgatgaccggcatctcccgcaagctc
cccgacaccgagcgcgcccgcctcaaggccatcctcaaggaggtcgtgcccgacggcgcc
ggcgtcatcgtgcgcaccgccgccgagggggcctccgaggccgagctcaaggccgatgtc
gagcgcctcacgaagcagtgggagcggatcgtcagcaaggccgagtcggcgaagcagaag
aagtccggtggcggtggcgcccccgcgctgctgcacggcgagcccgacctgaccatccgc
gtcatccgcgacgtcttcaccgaggacttcgcctcgctcgtcgtctccggcgagaaggcg
tggggcgaggtcagcgagtacgtcgaggacgtcgcgcccgacctcgcggcgcgcgtctcg
cgctggacctccgaggacgacgtcttcgccgcccaccgcatcgacgagcagatcagcaag
gcgatggaccgcaaggtctggctgccctcgggcggctcgctcgtcatcgaccgcaccgag
gcgatgaccgtcgtcgacgtcaacaccggcaagttcgtcggctccggcggcaacctcgag
gagacggtcaccaagaacaacctcgaggccgccgaggagatcgtgcgccagctccggctg
cgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtcctggagtccaaccgc
gacctcgtcgtgcgccggctgctcgagtgcctcgggcgcgaccgcacgaagcaccaggtc
gccgaggtcacctcgctcggcctcgtgcagatgacccgcaagcgcgtcggctccggcctc
atcgaggtcttctccgagccctgcgagcactgcggcggccgcggcatcgtcgtgcagtcc
gagcccgtcgagcgcggcaacggtggtggctccggcgacggcggtgggtcctcccgctcc
ggccgtgggcgtggtcgtggcggctcgtcgggtggctccggcggctccggtgggtccgcc
cccgagcccgaggcgcccaagcagggcaacggcgggccgagcgcggcccagatcgccgcc
gccgcgcacgccgccgccctcaagcacagcgagagccccgaggtcgccgacgaggtggcg
gcccaggtcgccgccgagctgggtgccgccgcggagcccgtggccgtcgacgacgcgccc
gagccggtcgtcgagcccgtggccgaccccgtcgtcgaggccgtcgtcgagtccgcgccc
gagccggcgcccgagccggtcgaggagcccgccccggcccgccggacgcggcgcaagcgc
ggccgggtcgtcgcgcccgccggtccgccgtccgccgccaccgcgagcaccgctccggcc
gacccggccgagcagcccgcgggggagtga
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