Peptacetobacter hiranonis: KGNDJEFE_00057
Help
Entry
KGNDJEFE_00057 CDS
T06633
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phx
Peptacetobacter hiranonis
Pathway
phx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KGNDJEFE_00057 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phx03021
]
KGNDJEFE_00057 (rpoC)
03400 DNA repair and recombination proteins [BR:
phx03400
]
KGNDJEFE_00057 (rpoC)
Enzymes [BR:
phx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KGNDJEFE_00057 (rpoC)
Transcription machinery [BR:
phx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KGNDJEFE_00057 (rpoC)
DNA repair and recombination proteins [BR:
phx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KGNDJEFE_00057 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
SHOCT
Motif
Other DBs
NCBI-ProteinID:
QEK19673
LinkDB
All DBs
Position
complement(42698..46186)
Genome browser
AA seq
1162 aa
AA seq
DB search
MFELNNFESIKIGLASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPMSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFASYVVTDPKETGLTAKQLLTEKEYRDAVDNYGYGSFEVGMGAEAVKKLL
QDIDLEQQSKELRADLKDSTGQKRIRTIRRLEVVEAFRKSGNKPEWMILDAIPVIPPDIR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPK
KMALELFKPFVMDKLVEEGYAHNIKSAKSIVEKVKTEVWDVLEDVIKNHPVLLNRAPTLH
RLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNI
LAPKDGSPITTPSQDMVLGSYYLTIEAQDGAKGTGMIFKDYNELLLAYYNKVVELHALVK
VRKVLPDGRSALVESTVGRFIFNEGIPQDLGFVDREKDPFSLEIDEVVTKKYLGKIIDKC
FRKHENTITAELLDYVKGIGFKYSTVGGITVAVADMAIPKEKEIYIAEAEKEVEKLGKAY
RRGLISDEERYEKVIATWTETTDKVTNALMDNLDRLNNIFIMAHSGARGSKNQIRQLAGM
RGLMANASGKTVEIPVKSNFREGLSVLEYFTSAHGARKGLADTALRTADSGYLTRRLVDV
SQDVIVRDIDCGTTETTEVLAIKDGNEVIEEIYDRIVGRYTIDPIVHPETGEVLVPADSM
IKEDAAEKIVAAGIEKVNIRTVLNCKTKHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLAIITEVSGQVKIDETGKRK
EVIVVPAEGEAQTYQIPYGSRVRVKDGQMVEAGDPITQGSINPHDIVRVKGIGGVQDYIV
KEVQRVYRLQGVDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLVYEKCNEDAIA
QGLRPAVAKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVILG
KLIPAGTGMKKYRNIAVEKIEE
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaacaatttcgagtcgataaaaataggattggcttctccagagaaaata
agacagtggtcgagaggggaagtaaaaaaaccagaaactataaattaccgtacgctgaaa
ccagaaaaagatggtcttttctgtgaaagaatattcggacctcagaaggactgggaatgt
cactgtgggaaatacagaagagttagatataaaggcgtagtatgtgatagatgtggagtt
gaagtaacaaaatcaaaagttagaagagagagaatgggtcatatagagctagctgctcca
atgtctcatatatggtacttcaaaggaatacctagtagaatgggtcttcttttagacatg
tctccaagagctcttgaaaaagtactttactttgcttcatatgtagtaacagatccaaaa
gaaactggattaacagctaaacagcttttaacagaaaaagaatacagagatgctgtagac
aactacggatatggtagctttgaagttggtatgggtgctgaagctgtaaaaaaactttta
caggatatagacctagaacagcagagtaaagaattaagagctgacttaaaagatagtaca
ggacagaaaagaataagaacaataagaagactagaagtagttgaagcattcagaaaatca
ggaaataaacctgaatggatgatacttgatgctattccagttataccaccagacataaga
ccaatggttcagttagacggtggtagattcgcaacttctgacctaaatgatctttataga
agagttataaacagaaataacagattaaaaagacttctagaattaggagctccagatata
atagtaagaaatgaaaaaagaatgcttcaggaagcagtcgatgcacttatagacaatggt
agaagaggtagacctgttacaggaccaggaaacagaccattaaaatctttatcagatatg
cttaaaggtaaacagggacgtttcagacagaacttacttggtaaacgtgttgactactca
ggacgttctgttatagtagttggaccagaacttaaattctaccagtgtggtcttcctaag
aaaatggcacttgaattattcaaaccatttgttatggataaattagtagaagaaggttat
gcacacaatataaaaagtgcgaaatcaatagtagaaaaagtaaaaactgaagtatgggac
gttttagaagacgttattaaaaaccatccagttttacttaaccgtgcccctactctacat
agactaggaatacaggctttcgaaccagtacttgttgaaggtaaggctataaaactacat
ccactagtttgtacagcgtacaatgccgacttcgacggtgaccagatggccgttcacgtt
cctctatcagtagaagcacaggcagaagcaagattcttaatgctatctgtaaacaatata
cttgctccaaaagatggttctccaataacaactccttctcaggatatggttcttggaagt
tactatttaacaatagaagcacaggatggtgctaaaggaacaggtatgatattcaaagac
tacaatgaattattacttgcttactacaataaagttgttgaattacacgctttagtaaaa
gttagaaaagttcttcctgatggaagatctgctctagtagaaagtactgttggtagattc
atattcaatgaaggtatacctcaggatttaggatttgtagatagagaaaaagatccattc
agtttagaaatagatgaagttgttactaagaaatatcttggtaaaataatagataaatgt
ttcagaaaacatgaaaacactataacagctgaattacttgactatgttaaaggtataggt
ttcaaatattctactgtaggtggtataacagttgcagttgcggatatggcaatacctaaa
gaaaaagaaatatacatagcagaagctgaaaaagaagttgaaaaattaggtaaggcttat
agaagaggtcttatatctgatgaagaaagatacgaaaaggttatagctacttggacagaa
actactgacaaagtaactaatgccctaatggataaccttgatagattaaataatatattc
ataatggctcactctggagccagaggttctaagaaccagataagacagctagcaggtatg
cgtggacttatggccaatgcatctggtaaaactgtcgaaataccagttaaatctaacttc
cgtgaaggtttatcagtacttgaatacttcacatctgcgcatggggctagaaaaggtctt
gccgatacagctctacgtacagccgactctggttacttaacaagaagacttgttgacgtc
agccaggacgttatagtaagagatatagactgtggaactacagaaactacagaagttctt
gctataaaagatggaaacgaagtaatagaagaaatatacgatagaatagttggtagatat
actatagatcctatagtacatccagaaactggtgaagtattagttcctgcagattctatg
ataaaagaagatgcagctgaaaaaatagttgcagcaggaatagaaaaagtaaacataaga
acagttcttaactgtaaaactaaacatggtgtttgttcaaaatgctatggtagaaacctt
gctacaggtaaagaagttaatataggagaagcagttggtataatagcagctcagtcaatc
ggtgaaccgggtacacagcttacaatgcgtacattccatacaggtggggttgccggtgga
gatataactcaggggcttccaagggttgaagagttattcgaagctagaaaaccaaaaggt
cttgctataataacagaagtaagtggacaggttaaaatagatgaaacaggtaagagaaaa
gaagtaatcgttgttccagctgaaggtgaagctcagacatatcagataccttatggctca
agagtaagagttaaagatggacagatggtagaagctggggatccaataactcagggttct
ataaatcctcatgatatagttagagttaaaggaatcggtggagtacaggattacatagtt
aaagaagtacagagagtctacagactacagggggttgatgttaacgataaacatatagaa
gttattgttagacagatgctatctaaagttaaagtagaagatccaggagatacagattta
cttccgggtggatatgaagatgttcttgtatatgaaaaatgtaatgaagatgcaatagct
cagggattaagacctgcagttgctaagagagtattacttggtataactaaagcatctctt
gctacagaatcattcttatctgccgcttcattccaggaaactacaagagttcttactgaa
gcagctataaaaggtaaagaagaccacttaataggactaaaagaaaatgttatattaggt
aaacttataccagctggtacaggaatgaagaaatacagaaatatagcagttgaaaaaatt
gaagaataa
DBGET
integrated database retrieval system
