Peptacetobacter hiranonis: KGNDJEFE_00629
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Entry
KGNDJEFE_00629 CDS
T06633
Symbol
rnr_1
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
phx
Peptacetobacter hiranonis
Pathway
phx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGNDJEFE_00629 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phx03019
]
KGNDJEFE_00629 (rnr_1)
03016 Transfer RNA biogenesis [BR:
phx03016
]
KGNDJEFE_00629 (rnr_1)
Enzymes [BR:
phx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KGNDJEFE_00629 (rnr_1)
Messenger RNA biogenesis [BR:
phx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KGNDJEFE_00629 (rnr_1)
Transfer RNA biogenesis [BR:
phx03016
]
Prokaryotic type
tRNA degradation factors
KGNDJEFE_00629 (rnr_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_Dis3
OB_RNR_1st
S1_RRP5
Rrp44_S1
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QEK20148
LinkDB
All DBs
Position
625313..627445
Genome browser
AA seq
710 aa
AA seq
DB search
MIPGLKEQLVGLINEPGYVPLKMEELAKIFDIHTSERPMFYNFIEELEQDGYVVRTKKNK
IMSAEQAGLFVGKFVAHEKGFGFVESDEEFVQDLFIPADYVETAMHGDRVVAEVVKEATD
ERRAEGKILRIVKREITEVVGTFQKCDARFAFVVPDSKRLTKDVYVPKSGFNGATTGDKV
VCKITLYPRAGKKPEGVITEVIGKKGDRYVEIDSIVRANNLPDDFPKKVQREAEQITAPT
EADFEGRLDLRDWNIFTIDGDDAKDLDDAVSVEKLKNGNYKLGVHIADVSHYVTEGSKID
KEALKRATSVYLVDKVIPMLPKELSNGVCSLNRGEDKLALSVIMEIDKHGTVVDHDIRET
VIDSKARMTYTEVSDILEKNDEKLCKTFAHLVDDFRTAEELARILMDKRDRRGAIDFNFP
ESKIVLDSEGIPVDIEPYERRIANRMIEEFMLVTNEIVAEHFYWLTMPFVYRIHENPSDE
KMATLGKFISSFGYKVNNGKDEEVHPKALQTVLKKIAGKPEESAISAIMLRSLRQARYSP
NCEGHFGLAAKFYCHFTSPIRRYPDLQIHRVIKEVINGRMDKKAKAHFEAVVSYASDHSS
EQERAADVAEREVDDYYKAVYMEKRIGQEYDGTVSGVTNFGIFVELPSSVEGLVRLADMG
DDYYNYDEENFCVLGERTKKMYKIGDSVRIKVVNVDIDRKEIDFKILKKY
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgatacctggattaaaagaacaattagtaggtttaataaacgaacctggatatgttcca
ctaaaaatggaagaactagcaaaaatatttgacatacacacatcagaaagaccaatgttc
tacaacttcatagaagaattagagcaggatggatatgtagttagaactaaaaagaacaaa
ataatgtctgcagaacaggcaggactttttgtaggaaagtttgtcgcacacgaaaaagga
tttggatttgttgagtcagatgaagaatttgttcaggacttattcattccagctgactat
gtagaaactgcaatgcatggtgatagagtagttgctgaggttgtaaaggaagcgacagat
gaaagaagagcagaaggaaaaatacttagaatagttaagagagaaataactgaggttgta
ggtactttccagaaatgcgatgcgagatttgcatttgtcgttccagatagcaaaagactt
acaaaagacgtatacgttccaaaatcaggatttaacggcgcaactactggggacaaagtt
gtctgcaagataactttatacccaagagctggcaaaaaacctgaaggtgtaataactgag
gttatagggaaaaagggagatagatacgttgaaatagactctattgtaagggcaaataat
ctacctgatgatttccctaaaaaagttcagagagaggcagaacagataactgctccaaca
gaggctgattttgaaggaagacttgatttaagagattggaatatattcacaatagacggt
gacgatgctaaggatttagacgatgctgtttctgttgaaaaattaaaaaatggaaactac
aaacttggggtacatatagcagatgtaagccattatgtaactgagggcagcaaaatagac
aaagaagcactaaaaagagcgacttcagtttatctagtagataaggtaattccaatgctt
ccaaaagaattatctaatggtgtctgcagtttaaatcggggcgaggataaacttgcactt
tctgtaataatggaaatagacaaacatggtacagttgtggaccacgatattagagaaact
gttatagactcaaaagcgagaatgacttacacagaagtgtctgatattcttgaaaaaaat
gatgaaaaattatgcaaaacatttgctcatttagtagacgattttagaacagctgaggaa
ttagctagaatccttatggataaaagagatagaagaggagctatagatttcaacttccca
gaatctaagatagtacttgactcagagggaattcctgttgatatagagccttacgaaaga
agaatagcaaacagaatgatagaagagtttatgcttgttacaaatgaaattgttgcagaa
catttctactggttaacaatgccatttgtctacagaattcacgaaaacccatctgatgaa
aaaatggctactttaggaaaattcatatctagctttggatacaaagtaaataatggaaaa
gatgaagaagtccatccaaaagcattacagactgttcttaaaaagatagctggaaaacca
gaagaaagtgcaataagtgcgataatgcttagatctttaagacaggcgagatattctcca
aactgtgaaggtcactttggactagcagctaaattctactgccacttcacttctccaata
agaagatatcctgaccttcagatacacagagttataaaagaagtgataaatggaagaatg
gacaaaaaagcaaaggctcactttgaagcagttgtgtcttatgcatcagaccattcatct
gaacaggaaagagcagcagatgttgcagaaagagaagttgacgattactataaagcagta
tacatggaaaaaagaattggtcaggaatatgacggtactgtttctggagttacaaacttc
ggtatatttgtagagctacctagcagcgttgaaggtcttgtaagacttgccgatatggga
gatgattactacaattacgacgaagaaaacttctgtgttcttggagaaagaactaagaaa
atgtacaaaatcggtgactctgtaagaataaaagtagtaaacgtagatatagatagaaaa
gaaatagacttcaagatacttaaaaaatattaa
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