Peptacetobacter hiranonis: KGNDJEFE_02052
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Entry
KGNDJEFE_02052 CDS
T06633
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phx
Peptacetobacter hiranonis
Pathway
phx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGNDJEFE_02052 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phx03019
]
KGNDJEFE_02052 (cshA)
03009 Ribosome biogenesis [BR:
phx03009
]
KGNDJEFE_02052 (cshA)
Enzymes [BR:
phx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KGNDJEFE_02052 (cshA)
Messenger RNA biogenesis [BR:
phx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KGNDJEFE_02052 (cshA)
Ribosome biogenesis [BR:
phx03009
]
Prokaryotic type
rRNA helicases
KGNDJEFE_02052 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEK21559
LinkDB
All DBs
Position
complement(2170793..2172409)
Genome browser
AA seq
538 aa
AA seq
DB search
MEIKRFEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSI
PILEKIDPNDRSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQIKAL
KGGVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVPEERQ
TTFFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQYYIETRASNKIEVLSRLIDV
YNPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDILVAT
DVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGRDMRKMKDIER
YTKSKLEKHPIPTVGDVEEKKVGAFFEEVKRVANEGKLSKQIQWLENFCENEDVDYSMVD
IAAALLKLAMGEEEKEEIIEEKPKKNRRKEESSGAKEGMVRLFINVGKKQRVQAKDILGA
IAGEAGIPGKTIGTIDIYDKFTFVEVPKKKAKTVIEKMKNKKIKGNKLNIEKANKKKK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaaaagatttgaagatttagacataaatcagaatataaagaaagcaatagct
gaaatgggatttgaagagccatctccaatacaggcaaaatcaataccagtaatattagaa
ggaaaggacgtcataggacaggctcagacaggtacagggaaaacagctgcgttttcaata
ccaatacttgagaagatagacccaaatgacagatcacttcaggctatagtactttgtcct
acaagagagcttgctatacaggtatctcaggaaataagaaagcttgcaaaatacatgcag
ggaataaaaactcttcctatatatggaggacagcctatagatagacagataaaggcttta
aaaggcggtgtacaggttataataggtactccaggacgtactattgaccatataaaaaga
aaaacaataaagccaggaaatgttaagatggttgtacttgatgaagcggatgaaatgcta
gacatgggattcagagaagatatagaaacaattcttgaaaatgttccagaagaaagacag
actacattcttctcagcaactatgccaaaagcaatacttgagcttactaaaaaatatcag
aacgaaccagaacatataaaagttgttagaaaagaattaactgttgaaaatataaaacag
tactatatagaaacaagagcatctaataagatagaagttttatcaagattaatagatgta
tataatccaaagctttctgtagttttctgtaatacaaaaaaaggtgcggacgaacttgtc
ggtgaattacagggtagaggatattttgcagatgcattacatggagatttaaaacaggta
cagagagatatcgtaatggataaattcagaaacggtactatagatatactagttgctaca
gatgttgcagctagaggtatagatgttgatgacgttgagtgtgtattcaactttgatctt
ccacaggatgaagagtactacgttcataggataggtagaacaggtagagcaggtagagaa
ggtctttcattctcatttgtttacggaagagatatgagaaaaatgaaagatatagaaaga
tatactaaatcaaaacttgaaaaacatccaatacctacagtaggagatgttgaagagaaa
aaagttggagcattctttgaagaagttaagagagttgccaacgaaggaaaactttctaaa
cagatacagtggttagaaaacttctgtgaaaatgaagatgttgactattcaatggtagat
atagctgcagcccttcttaaattagctatgggtgaagaagaaaaagaagaaataatagaa
gaaaaacctaagaaaaatagaagaaaagaagaatcttctggtgcgaaagaaggtatggtt
agactattcatcaatgttggtaagaaacagagagtacaggctaaagacatacttggtgca
atagctggtgaagcaggaataccaggaaaaacaataggaacaatagatatatatgataaa
tttacatttgttgaagttcctaagaaaaaagcaaaaactgtaatcgaaaaaatgaaaaat
aaaaaaataaaagggaacaaattaaacatagaaaaagctaataaaaagaaaaaataa
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