Pseudothermotoga hypogea: AJ81_00840
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Entry
AJ81_00840 CDS
T04277
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phy
Pseudothermotoga hypogea
Pathway
phy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AJ81_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phy03400
]
AJ81_00840
Enzymes [BR:
phy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AJ81_00840
DNA repair and recombination proteins [BR:
phy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AJ81_00840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
SecA_DEAD
AAA_16
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJC72976
UniProt:
A0A0X1KNV4
LinkDB
All DBs
Position
complement(155060..157816)
Genome browser
AA seq
918 aa
AA seq
DB search
MLLIVPTEKEASQIASTLNARYFPGPDVFPFEEVPVSFFVRKGRIETLWSLLNKECKLVV
TSVHSASRYTMSVESLKSLSMRFKRNERFVDADWLQRLGYERAYLVRSGGEFAIRGDIID
VFPPVYERPVRIELFGNSIEDIRSFDVISQTSVEKLEEFVLLPAREYACESHDYDTIVGK
AGSNGTIFDYADFEILLVDADRCFEEFAKLERQIREFLSDEQYEEYRKYSRLNLAELQRR
LQVAKEVQLDLQGLEYSEKKGSLLQVPIIDEEELNVGDFVVHENYGVGVFEAVKPVTNAL
GTKEYIVIRYEDATIYVPVERLDKIHKYIGDPDVKIDRLHGGTWKRRLDKVKEDLRRKIA
ELVDIYMRRQEAKGLGLVGDFDLERRFAETFPYVETHDQSVAIQDVLEDLASDRPMDRLL
CGDAGYGKTEVALRAAFRCVVSGKQVALLVPTTVLAKQHYRIFKQRMEPFGVSVALLDRS
VPKSERNKIVEDLRAGKIDVLIGTSALLSDNVKFSDLGLVIIDEEQNFGVEQKESFKKIR
LNVNVLSMSATPIPRTLHMAMNGMRDMSVLTTPPLGRLPVVTYVARYDDRLVRGAILREI
NRGGQVIYVHNRVEDLREVYEKICRLVPEARIVMAHGQMPTRKLMEAVRSFYERNSDVIV
CTSIMQNGIDVPSANTIIVDDAHRYGLAQLYQLRGRVGRSDKRAFAYFLFDSELNLSALK
RLQVIREFSGPGSGLKIALKDMEIRGIGTIFGFEQHGNVNAVGLNMYLQILNEELKHTMH
AEPLERVDVEIEGVPGSFYIPEDFIENEMERLRTYRRMASCESLKSLDELKAELRDRFGE
LPEQVEQLIDLFKIRLVAIQKKIKKIAFDETTLKVYTENGSLKLPGKFIYNEKEKVYLLY
NVPAERCLLLLKKIFLRD
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atcctcttgatagtccccaccgagaaagaagcatcacagatcgcttcaaccttgaacgct
cgatacttcccaggtccagacgttttccccttcgaggaagtgcccgtctctttttttgtt
cgcaaaggtcgtatcgaaacgctctggagcctcttgaacaaagagtgcaagctcgtcgtg
acgagtgtgcattctgcgagccgctacacgatgagtgttgagtctttgaagagtctttcg
atgaggttcaagcggaacgaaaggttcgtcgatgcagattggctccagaggcttggctac
gagagagcttacttggtgaggtcgggtggcgagttcgccatcagaggcgacatcatcgat
gtgttcccaccggtctacgaaagacccgtacggattgagttattcggaaattcgattgaa
gacatcagaagtttcgatgtcatcagccagacttcagttgagaagttggaggaattcgtt
cttttgcccgcacgagagtacgcgtgtgagagtcacgactacgatacgatcgtcggaaaa
gccggctcgaacggcacgatattcgattacgcagacttcgaaattcttctggtggatgca
gatagatgcttcgaagagttcgcaaagctggaaagacagatcagggaatttctttcggac
gaacagtacgaagagtacagaaaatattctagattgaacctcgctgaacttcagcgaagg
ctccaggttgcgaaagaggtgcaactcgaccttcaagggctcgaatactccgaaaagaag
ggtagtttgctccaagttcccatcatcgatgaggaagaactcaacgtgggcgatttcgtg
gtacacgaaaactatggcgtgggagtcttcgaggccgtcaagccggtgacgaacgccctc
ggtacgaaggagtacatcgtgataaggtacgaagatgcaaccatctatgtgcccgtcgaa
agattggacaagatccacaagtacattggcgatccagatgtgaagatcgatcggctccac
ggaggaacgtggaagagaaggctcgacaaggtcaaagaggatttgaggaggaagatagcc
gaactcgtagacatctacatgaggaggcaagaagctaagggacttggacttgtaggcgat
ttcgacttggaacgaaggttcgccgagaccttcccgtacgttgaaacccacgatcaatct
gttgccatccaggatgttctggaagaccttgcgagcgatcgtccgatggacaggcttctc
tgtggtgatgccggttacggcaagaccgaggtagctctgagggcagcgttcagatgtgtc
gtgagtggaaaacaagttgccttgctcgtccctacgacggtgctggcaaaacagcactac
aggatcttcaaacagaggatggaaccattcggtgtgtctgtagccctgctggacagatcg
gttccaaagtctgagcgaaacaagatagtcgaagatctcagagcagggaaaatagacgtg
ctgataggaacgagtgcgttgctgtccgacaacgtcaaattttctgaccttgggcttgtc
atcatcgacgaggaacagaacttcggtgtggaacagaaagagagcttcaagaagatcagg
ctgaacgtgaacgttctgtccatgagtgccacacccataccgagaaccttgcacatggcg
atgaacggtatgagagacatgagtgtcttgacgactcctcctttgggaagattgcccgtg
gtgacgtacgttgcccgttacgatgacagactcgtcagaggtgcgatactgagggagatc
aacagggggggacaggtgatctacgtgcacaaccgtgttgaagatttgcgcgaggtctac
gaaaagatctgtagactggtacccgaagcgcgtatcgtcatggcacacggtcagatgccc
acgaggaagttgatggaggcggtcagaagcttttacgagagaaactcggacgtgatcgtt
tgcacttcgatcatgcaaaacgggatagacgtgccttcagcgaacacgatcatcgtcgac
gatgcgcaccgctatggtttggcccaactttaccagctcagaggaagggtgggaaggagt
gacaaaagggccttcgcgtacttcctattcgattccgaacttaacctttccgcgttgaag
aggcttcaagtcataagggaattctctggccctgggagcggcttgaagattgcactcaaa
gacatggaaataagaggcataggaactatctttggttttgaacagcacggcaacgtgaac
gctgtcggcttgaacatgtacttgcagatactcaacgaagaactcaaacatacgatgcac
gccgaacctctcgaacgtgtggacgttgagatcgaaggtgttccaggttcattctacata
cctgaagatttcatcgaaaacgagatggagaggctcaggacgtaccgaagaatggcttct
tgtgaaagtctgaaatcgctcgacgagctgaaggccgagttgagagacagattcggtgaa
ctgcccgaacaggtggaacaactgatcgatctgttcaagataaggctcgtggcgatccaa
aagaagatcaaaaagatcgctttcgacgaaacgactttgaaggtttacaccgaaaacggt
tcactaaaactgcctggaaagttcatctacaacgagaaagagaaggtgtatctgctctac
aatgttcccgcggaaagatgtcttttattgctcaaaaagatcttcctaagggactga
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