KEGG   Pseudothermotoga hypogea: AJ81_00860
Entry
AJ81_00860        CDS       T04277                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
phy  Pseudothermotoga hypogea
Pathway
phy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AJ81_00860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phy03021]
    AJ81_00860
   03019 Messenger RNA biogenesis [BR:phy03019]
    AJ81_00860
Transcription machinery [BR:phy03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AJ81_00860
Messenger RNA biogenesis [BR:phy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AJ81_00860
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT AAA_24
Other DBs
NCBI-ProteinID: AJC72980
UniProt: A0A0X1KP29
LinkDB
Position
complement(160229..161494)
AA seq 421 aa
MTVKINDLEQMTIKQLYELAKQYDIPRYTSMRKRDIIFAILEAQAKSHGLIFGEGVLEIL
PDGYGFLRSSDNLLPGNNDIYISQSQIKKFNLNTGDIISGVIRPPKEGERYFAMIKIEAV
NYKSPELSNERVNFENLTPDYPKERFILETSRDVLSTRLIDLFAPMGKGQRGLIVAPPKA
GKTTLLKEIANGIAINHPDTIRIVLLIDERPEEVTDIKESVNAKVIAAPFDMAPDKQIKV
AELTLEMSKRLVEYGYDVVILLDSLTRLARVYNIQVPPSGKLLSGGVDPAALYKPKHFFG
AARNTREGGSLTIIATALIETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLQL
SGTRKEELLLNEDTLKKVWILRRMLSGMTEEEGLTLILKKLQETETNEDFLALIDQQKVK
Y
NT seq 1266 nt   +upstreamnt  +downstreamnt
atcaccgtgaagatcaacgacttagagcagatgacgatcaaacagctgtacgaactggca
aagcagtacgatattcctcgttacacgagcatgcgcaagagagacatcatattcgctatc
ttggaggctcaggccaagtctcacggtttgatctttggagaaggtgtcctcgagatccta
ccggacggatacggttttctgagaagcagcgacaacctgctccctggcaacaacgatatc
tacatctcgcagtcgcagataaagaagttcaacctcaacacgggtgacatcatatctggt
gtcataaggcctccaaaagagggtgagcgctactttgcgatgatcaagatcgaggcggtc
aactacaaatcgcccgagctaagcaacgagagggtcaacttcgagaacctgacgcccgac
tatcccaaagaacgcttcatactcgagacgagtcgcgacgtgctttccacacgactgata
gacctgtttgcccccatgggtaagggacagagaggcctcatcgtggcaccacccaaggcg
ggaaagacgacactcctgaaagagatcgccaacggcatagcgataaaccatccagacacg
atcaggatcgtactcttgatcgacgagagacccgaagaggtcaccgacatcaaagagtcc
gtgaacgcgaaggtgatcgcagctccgttcgatatggccccagacaagcagatcaaagtc
gcagaactcactctcgagatgtcgaaaagactcgttgagtacggttacgatgtggtcata
ctgctcgacagcttaaccaggttggcgcgcgtttacaacatccaagttccaccgagtggc
aaacttctgagcggaggtgtggaccccgctgccctgtacaaaccgaagcatttcttcggt
gcagcgaggaacactcgcgaaggtggcagcctcacgataatagccaccgccctcatagaa
accggttcgaagatggacgaggtcatattcgaggaattcaaaggtacgggtaacatggaa
ttggttttgtcgaggcagctcgccaataaacgcatcttccccgccataaacctgcagctc
tctggaacgaggaaggaagaactcctgttgaacgaggacacgctcaagaaggtgtggatc
ttgagaaggatgctctccggaatgacggaagaggaaggtctgacattgattttgaagaag
cttcaagaaactgagacgaacgaagacttcctcgcgctgatagaccagcagaaggtaaag
tactga

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