Pseudothermotoga hypogea: AJ81_00870
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Entry
AJ81_00870 CDS
T04277
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
phy
Pseudothermotoga hypogea
Pathway
phy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AJ81_00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phy03021
]
AJ81_00870
03400 DNA repair and recombination proteins [BR:
phy03400
]
AJ81_00870
Enzymes [BR:
phy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AJ81_00870
Transcription machinery [BR:
phy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AJ81_00870
DNA repair and recombination proteins [BR:
phy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AJ81_00870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AJC72982
UniProt:
A0A0X1KNZ8
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All DBs
Position
complement(162111..163112)
Genome browser
AA seq
333 aa
AA seq
DB search
MEFMIPKRLKVEEERSEADCYYARYVFSPLEKGYGITIGNALRRVLLSSIPSIAIVGLRF
IKPERYHEFDTLPGVKEDILEIILNLKKVQLRAEVPVRERIKIMVEKKGPGLLLAGDIKT
PAGIEVVNPGLKIATLDEEADLLFELYVQAGKGFVPAQDIEEHPEIGSIPIDGVFSPVLR
VNFKVESARVAKRTDYDKLVLEVWTKKSIFPHEALKRAIDTLMNHFKVIDESLPSTMAPL
SAEFVTVTAQEETVAEQMPHVEEESIYSKKIDELELSIRSLNCLRRDKIETIGDLLKRTE
EDLLKIKNFGPKSLEEVKQKLMEKFGLTIRKGG
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggaattcatgatacccaagaggttgaaagtggaagaagaacgatcggaggcggattgc
tactacgccagatatgttttctcgccactcgagaagggatacggtatcaccataggcaac
gcactgagaagagtgcttctgtcgtcgataccttccatagccatcgtgggtctgaggttc
ataaagcccgaaagataccacgaattcgacacgctaccgggtgtcaaagaagatatcttg
gagatcatcctcaatttgaagaaggtccaattgagagcggaagtccccgtcagagagaga
atcaagataatggttgaaaagaaagggccgggcctgttgctggccggagacataaagaca
cccgcgggtatcgaggtcgtcaacccaggattgaaaatagccacactggacgaagaagca
gatctgttgttcgaactctacgttcaggcaggaaaaggcttcgtgccggctcaggatata
gaagaacacccggagataggttccataccgatcgatggggtcttttcgccggtcctgcgg
gtgaacttcaaagttgagagcgcgagggtggccaaacgtaccgactatgacaaactcgtg
ctcgaggtctggacgaagaaatccatctttccgcatgaggcactgaagcgagcgattgat
acccttatgaaccacttcaaggtcatagacgaaagtctaccatcgactatggcaccgctg
tctgcggagttcgtcacagtgacggcacaggaagagacagtcgccgaacagatgccacat
gttgaggaggaatccatctattctaagaagatagacgagctcgaactgtctataaggtct
ttgaactgcctgagaagggacaagatcgagacgataggtgatcttttgaagcgcacagag
gaagatcttttgaagatcaagaattttggaccgaaatccctcgaagaagttaagcagaaa
ctgatggaaaagttcggtttgacgatcaggaagggaggatga
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