KEGG   Pseudothermotoga hypogea: AJ81_10415
Entry
AJ81_10415        CDS       T04277                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
phy  Pseudothermotoga hypogea
Pathway
phy02024  Quorum sensing
phy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AJ81_10415
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AJ81_10415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phy03019]
    AJ81_10415
   03036 Chromosome and associated proteins [BR:phy03036]
    AJ81_10415
Messenger RNA biogenesis [BR:phy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AJ81_10415
Chromosome and associated proteins [BR:phy03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AJ81_10415
SSDB
Motif
Pfam: Hfq Hfq_1 LSM DUF4809 EndoS_Ig-like Glyco_hydro_100
Other DBs
NCBI-ProteinID: AJC74522
UniProt: A0A0X1KTJ8
LinkDB
Position
complement(2079800..2080078)
AA seq 92 aa
MAEKFNLQDRFLNTLRTSKIEVKVYLVNGFQTKGIIRSFDSYTILLENENQQSLIYKHAI
STIMPTSFVRLVKTEQKEKEEASQAQPDGSDE
NT seq 279 nt   +upstreamnt  +downstreamnt
atggcagagaagttcaatcttcaggacaggtttctcaacactctacgcaccagcaagatc
gaagtcaaagtttacctggtgaacggttttcaaaccaaagggatcattcgttctttcgac
agttacacgatcttgctggagaacgagaaccagcagagtctcatctacaagcacgcgata
agcacgataatgccaacatcgttcgtcaggcttgtgaaaaccgaacagaaggaaaaggag
gaagcatcacaggctcaaccagatggttcggacgaatga

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