Pseudomonas hygromyciniae: JTY93_05280
Help
Entry
JTY93_05280 CDS
T09404
Name
(GenBank) membrane-targeted effector domain-containing toxin
Organism
phyg
Pseudomonas hygromyciniae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAN1_TPR
Motif
Other DBs
NCBI-ProteinID:
QSB40801
LinkDB
All DBs
Position
complement(1215243..1220951)
Genome browser
AA seq
1902 aa
AA seq
DB search
MSTSNPPLSFDEIKSSLNLIGHHLLDVDSPLLPAQTPSADLAYLESLNTLLKQYRQQFLA
KSRALYQGLAQHDLQSTEGQTLLATLKTTLNTQLLELDRREQIDGKARKSFMTFEAGFTA
QAKEAALGATDRLLHPQERAILDRIPLGATLRPGLYAVTLQYQGHTVELAGAFVLTEQSS
PVVTDLTSVTPVGRVGLFTPSRGFEFFDSLASLYSQLFQRLASPEERRHFMDLLARSYHA
LTPSAIWPLALTPIQDRPLYEHLDNALIAKRSEDIDRALSLVDNPGNDSQALIDALEQAI
RGALPDLTARLQWRAQALLDRWLRHSAPDWYRSASDARRALLAEYLHRYNEARQNLEQLL
GPLATPHALARHQWLERLSDDLEIHDLAPEQLQVSTRRFVSAVGEYTHERNLIELALRGL
HPGDEQPGSEFLKKTTLRYAGAALPNTYVELTPAWLVEQLSTLQPRIDFGELQKHLHAKT
ELRQAIETLFDHRINALAYAAMLQGHLREDDFERIQRLRQGSDPQLSASTLALHEAQLQD
LWVLRQRNAQGVVDRVLLCTPQAPREQQFQAFDSEIACQNHILGWALDNGGTPPQGSLTD
YLLGRVALRFRAKMNQVLSGLSYKSHAQEHQEITFGPAHSHAECLKAMASHVLATRTDDD
AFNTPDWYRSAPADTRRTLMKRADDSDEGLRFYNAFSLSEAQMPSFAAYLHEQARKRLNQ
LLGRAGNDVDPDTVWAYSPTALIGTSTPAPLSYTQLYRDGYADGIGFLEEKFSRSARFKG
PEGVDLSPLTAEKVARSVTGVWIGQRYIDEVKSRLLNVGQPDYEMRRNATLALTQMQLRN
AALECRLQGHIASLDLKWLERTLSSMDQTSPQIRGEHAIHRLVIDGEWVIGCYLFSHDNH
PTLLYTPNAPDDISLREARLFNYLLKKLPGMLGYLLERVAVQSKARVRTFLEEARRQLPE
DLDKTSSSPARHDPIRSQTQVQDLRRELYDLRLQRTIDDVQATTVNRTQMISGIFWTCVE
WVAAIATAPFPVLSLSVGLALAFKDGMLALHAYHQGDNAQALEHFIGYLLNSAGGLFTDL
RPALGTLQQFVRPVVRQAPRRIAQSPALKLIAPLEPTPAKPAGMQSVLFNGEFLWAPLTP
DPIGRYLLYRLDPVTGKLVSTTRLAAPDAQGVWKRTGVTGGAPKYEKVPETPDSLKNYEM
PAKYMDKVEHVLNPELKAQLRKQGDWVYDNPHVTLAIAAQDLQPVRQVYQQQVSQLRKDA
EVFFSTPRAPAQRAALQPVTADTSLAALVGTPANTRAPNLIIGAEPSSIASQQVLIDNIE
ALAAKGYKRLYVEYLPGDVFRQKLAKLNNGKSWKHIERHLKVVDKAFGFAENGPFSYLAL
VRKASAKGLKIKALDASTSYHLEDALVLGDTPPTTAREPGLRNFYSSRVLEADSEALPDE
PWIALVDPARMSTVNQRPGLADLHNAIAVRVEEVGPGQATGMRIDNLGATVADGKSADYV
LAVQTHTTTVDLPGPSTTTAPAAAGHYSDYDIAPQLRESIRVQSSEARRLSNIYEPTHEK
YRKAHYAFKDAQKRLNEHAKQYLSSHTLPARPDLAPLSAQTQPVPFLQSVSESSLPGLVI
GEAKKAQSSKAFLIEHMQTLKDLKFDTLYIQRLLTDQNQADLDAFLNSRKMSTHLKDDIK
KLDTYSGSHSYFEVIQKANKYGIRVRALDCNASYHAKDAGPEARNRMFSYFASHVISADQ
AANGPHKWVAFVDASHTNTNRQIPGLADLQGTVSLNIRDSASSLSSDIRPGRWETSLAAE
WTASRSDFTLEVGVTGTPPYDFVPLDRTRLKASGHFLVERPSMSETNLLHKSRTGEIVST
PIQVDDQGLFFIDRWGMKDQRFPHQDTLITAIRRNMELTPAP
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacttccaatccccccctgagctttgacgagatcaaaagctcactcaacctgatc
ggccatcatctgctcgatgtcgatagccctttgctgcctgcgcaaaccccgtcggcagac
ctggcttatctggagagcttgaacacgcttctcaagcagtaccgtcaacagttcctggcc
aagagccgcgcgctgtaccagggtttggcccaacacgatctgcaaagcactgaaggccag
accctgctggccaccctcaagaccaccctgaacacgcaactgctggagttggaccgacgc
gagcagattgacggcaaggcgcgcaaatccttcatgacctttgaagcgggcttcaccgca
caggccaaggaggcggcgctcggcgcgacagatcgcctgctgcatccgcaagaacgggcg
atcctcgatcgcataccgctgggggcgactctgcgtcccggcctgtacgcagtgaccctg
caataccaggggcacaccgtggagctggccggtgcgtttgtcctcaccgagcagtcgagc
ccggtcgtcaccgacctgacgtctgtcacgccggtgggccgcgtagggttgttcacgccc
tcacgagggttcgagtttttcgactcgttggccagcctctacagccagttgttccagcgc
ctggccagccccgaagaacgccgccacttcatggacctgcttgcccgcagctatcacgca
ctgacaccgagtgccatctggccactggcgttgacaccaatccaggatagaccgctgtac
gagcatctcgataacgcgctgatcgccaaacgcagcgaggacattgatcgcgcactgagc
ctggtggacaacccgggcaacgacagccaagcgttgatcgatgccctggaacaggcgatc
cgtggcgccctgcccgacctcacggcgcgcttgcaatggcgcgcccaggccctgctggac
cgctggctgcgccacagcgcacctgattggtaccgcagcgccagcgatgcgcggcgtgcc
ctgctggccgagtacctgcatcgctacaacgaggcccggcagaatctggagcagttgctc
ggccccctggccacaccgcacgccctggcgcggcatcagtggctggagcgtctgagcgat
gacctggagatccacgatctggcccccgaacagttgcaggtcagtacccggcgctttgtc
agcgccgtcggcgaatatacccacgagcgcaacctgatcgaactggccctgcgcggcctg
catccgggcgatgaacaacccggctccgaattcctcaaaaagaccaccctgcgctacgcc
ggcgcagcgctgcccaacacctatgtcgagctgacacccgcctggctcgtagaacaactg
agcacgttgcagccgcgcatcgactttggcgagttgcaaaagcacctgcacgccaagacc
gaactgcgccaggccatcgaaaccctgttcgaccacagaatcaacgccctggcctacgcc
gcaatgctgcaagggcatttgcgcgaagacgacttcgagcgcatacagcgcctgcgccaa
ggcagcgatccacagctgagcgcttcgaccctggccctgcacgaggcacaactgcaagac
ctttgggtactgcgccagcgcaacgcccagggtgtggtcgaccgtgtgctgctgtgtacc
ccacaggccccccgcgaacagcagttccaagcgttcgacagtgaaatcgcgtgccagaac
catatcctcggctgggccctggacaacggcggcacgccaccgcaaggcagcctgaccgac
tacctgctcggccgtgtcgccctgcgctttcgcgccaaaatgaaccaggtgctcagtggc
ctgagctacaagtcccatgcccaggaacaccaggaaatcaccttcggccccgcccacagc
cacgccgaatgcctcaaggccatggccagccatgtgctggccacgcgcactgatgacgat
gcgttcaacacccccgactggtatcgctcggccccggcggacacgcgccgcaccctgatg
aagcgggcggacgacagcgacgagggcttgcgtttctacaacgcgttttcattgtccgag
gcgcagatgcccagtttcgcggcctatctgcatgagcaagcccgcaaacgcctgaatcaa
ttgctgggacgcgcaggcaacgatgtggatcccgacactgtctgggcctattcgcccacc
gccctgatcggcacctcgacgcccgcccccctcagctatacccagctgtatcgcgatggc
tatgccgacggcattggttttctggaggagaagttctcgcgctcggcccgcttcaaaggc
cccgaaggcgtggacctgagcccgctgaccgctgaaaaggttgcccgctcggtcaccggc
gtgtggatcggccagcgctatatcgatgaggtcaagagccgcctgctgaatgtcggccaa
cccgactacgaaatgcgccgcaatgccaccctcgccctgacccagatgcaactgcgcaac
gcggcccttgaatgtcgcttgcaagggcacatcgcctcgctcgatctgaaatggctggag
cgcactctttcgagcatggaccagacgtcaccccagatccgtggcgagcacgccatccat
cgtctggtcatcgacggtgaatgggtgatcggttgctacctgttcagccacgacaatcac
ccgacgctgctctacaccccaaatgcgccggacgacatcagcctgcgcgaagcccggcta
ttcaattacctgctgaaaaaactccctggcatgttgggctatctgctggagcgggttgcg
gttcaatccaaggcgcgggtgcgtacgttcctggaagaggccaggcgccagttgcccgag
gatctggataaaaccagcagcagcccggcacgccatgacccgatccgctcccagacccaa
gtgcaggacctgcggcgcgagctgtacgacttgaggttgcagcgcacgattgacgatgtg
caagcgaccaccgtcaaccgcactcaaatgatcagtggcattttctggacctgcgtggaa
tgggtcgccgccatcgccaccgcgcccttcccggtcctgagcctgagcgtcggcctggcg
ttggcgttcaaggacggcatgctcgccctgcacgcttaccatcagggcgataacgcccag
gccctggagcacttcatcggctatctgctcaacagcgcaggtggcttgttcaccgatctg
cggcccgccctcggcaccctgcagcaattcgtccgccctgtggtgcgccaggcgccacgg
cgcatcgcgcaaagcccggcgctgaaactgatagcccctctggaacccacgccggcgaag
cctgcgggcatgcaatcggtgctgttcaatggcgagtttctttgggcgccgctgaccccg
gaccccatcggtcgctatttgctgtaccgcctggacccggtcaccggcaagctggtctcg
accacccgtctggccgcgcccgatgcccagggcgtgtggaaacgtaccggcgtgaccggc
ggcgcgccgaaatatgaaaaagtcccggagacccccgacagcctgaaaaactacgagatg
ccggccaagtacatggacaaggtggagcacgttctgaacccggaactcaaggcccaactg
cgcaagcaaggggattgggtttacgacaatccgcacgtcaccctggcaatcgcagcacag
gatctgcagccggtgcgccaggtgtaccagcaacaggtcagccaactgcgcaaggatgcc
gaggtttttttcagcacccccagagcgccagcgcagcgtgccgcgttacagccggtcacg
gcagatacttcgctggcagcactcgtcggcaccccggccaacactcgcgcgccgaacctg
attatcggcgccgaaccgagctccatcgccagccagcaagtactgattgataacatcgag
gcgttggctgccaagggttacaagcgcctgtatgtggaatacctgcccggcgatgtgttc
cgccagaaactggcgaaactcaacaacggcaaatcctggaagcatatcgagcgccacctg
aaggtggtcgacaaagcgtttggcttcgcggagaacgggccattttcctatcttgcgctg
gtgcgcaaggcctcggccaagggcctgaagatcaaggcactggacgcctcgacgtcctac
catttggaagacgccctcgtcctgggcgacacaccgcccaccactgcccgagagccaggg
ctgcgcaatttctattcgtccagggtgctggaggccgatagcgaagcgttgcccgacgaa
ccctggatcgctctggtcgatccggcgcgcatgagcacggtcaatcaaagacctggcctg
gccgatctgcacaacgccattgctgtgcgagtggaggaagtcggccctggccaggcgacc
gggatgcgtatcgacaacctcggcgccaccgtggcggatgggaaatcggccgattacgta
ctggcggtgcaaacgcacaccacaaccgtcgacctgccagggccctctaccacaacggcg
cccgctgcggccgggcattacagtgattacgatattgccccacaactgcgtgaaagcatt
cgcgtccagtcaagcgaggcccgccgcttgagcaatatttatgaacccactcatgaaaaa
taccgcaaggcgcactacgccttcaaagacgcccaaaagcgcctgaacgaacacgccaaa
cagtatttaagcagtcacaccctacccgcccggccggaccttgcaccgctcagcgcgcaa
acacagccggtgccgtttctccaatcggtaagcgaaagctccttgcccggattggttatc
ggcgaagcgaaaaaagcgcaatcgagcaaggcgttcctcattgaacatatgcaaacactc
aaggacctgaagtttgacaccctttacatccaacgcctgctcacggaccagaaccaagca
gatctggacgctttcctcaattcaagaaagatgtctacccacctcaaggacgacatcaaa
aaactggatacctacagtggctcccacagctatttcgaagtgattcaaaaagccaataaa
tacgggatccgggtccgcgcactcgactgcaatgccagctaccacgccaaagacgccggc
ccagaggcccggaaccggatgttcagctacttcgcctcgcacgtaatcagtgcggaccag
gcggcaaacggcccgcataagtgggtggctttcgttgacgcctcccataccaacaccaac
cgccagataccaggcctggccgacctgcaagggaccgtcagcctgaatatccgcgatagc
gcatcgtctctgtccagcgacattcgccccggtcgctgggagacgagccttgcggccgaa
tggacagcgtcacgcagtgactttacgttggaggtcggcgtgacgggcacaccgccttat
gattttgtgccgctggatagaacgcgcttgaaggcgtccggacatttcctggttgaacgc
ccctcgatgagtgaaaccaacctgctgcacaaatccaggaccggagaaatcgtctcgacg
ccaatccaggtggatgaccaagggctgtttttcattgatcgctggggcatgaaagatcag
cgcttcccccaccaggacacgttgattactgccatccgaaggaacatggagctgaccccg
gcaccgtaa
DBGET
integrated database retrieval system
