Pseudomonas hygromyciniae: JTY93_06850
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Entry
JTY93_06850 CDS
T09404
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phyg
Pseudomonas hygromyciniae
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phyg03016
]
JTY93_06850 (rnd)
Enzymes [BR:
phyg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JTY93_06850 (rnd)
Transfer RNA biogenesis [BR:
phyg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JTY93_06850 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QSB41088
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All DBs
Position
1555629..1556762
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AA seq
377 aa
AA seq
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MAIDIHWICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPL
TIDNWQPLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQAVLDIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAQVYTRLRPRLSDDKYAWV
LEDGAELVANLRREIDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPRNRII
REHSLWPLAKSQPDNLAALGKIEDMHPRTVRQDGEFLLGLIKRAASVPMDQWPPAVPEPL
PVDAAVLIKQLRALGQTFAERLDMAPELMLRKKTLEALVKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggatctgcgacaacgatagcctcggccagcattgcgccgaa
tggcagcagttgccattcgtcgccctcgacaccgaattcatgcgggtcgacaccttctat
cccatcgccgggttgatccagatcggagacggtgtacgcgcttatctgatcgatcccctg
accatcgataactggcaacccttggccgcgctgctggaaaatccagcggtgatcaaggtg
gtgcacgcctgcagcgaagacctggaagtgttgctgcgcctgaccggcagcctgccagtg
ccattgttcgacacgcaactggcggcagcctacttgaacctcggcttctccatgggctac
tcgcgcctggtgcaagcggtgctggatatcgagttgcccaagggcgagacccgttcggac
tggctgcagcggccattgtccgagacccaggtcagttacgccgccgaagacgcggtgcat
ctggcgcaagtctatacacgcctgcgtccgcggctgtctgacgataagtacgcctgggtc
ctggaagatggcgccgaactggtggccaacctgcgccgggaaatcgacccctacgaggtc
taccgcgacgccaagctggcttggaaactgtcccgggcccaactcgccgtgttgcgcgaa
ctgtgcgcctggcgcgagcagcaggcccgtgcccgtgacctgccacgcaaccgcatcatc
cgcgaacactcgctatggcccctggccaagtcgcagccggataacctcgctgccctgggc
aaaatcgaagacatgcacccgcgcaccgtgcgccaggacggcgagttcctgctgggcctg
atcaagcgtgccgccagtgtgccgatggaccaatggccaccggctgtgccggagccgttg
ccggtggatgccgcggtgctgatcaagcaactgcgcgccctgggccagaccttcgccgaa
cgcctggacatggccccggaactgatgctgcgcaagaaaaccctggaggcgctggtcaag
agcggctaccccgatgggccttaccaattgcctgactcgctgcgtggctggcgccgcgag
ttgatgggccaggcgctgctggacagcctggccactgccggagaacagccttga
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