Pseudomonas hygromyciniae: JTY93_07220
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Entry
JTY93_07220 CDS
T09404
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
phyg
Pseudomonas hygromyciniae
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phyg03009
]
JTY93_07220 (rlmD)
Enzymes [BR:
phyg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JTY93_07220 (rlmD)
Ribosome biogenesis [BR:
phyg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JTY93_07220 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
TRAM
Cons_hypoth95
MTS
Methyltransf_11
Methyltransf_23
PCMT
Methyltransf_15
Methyltr_RsmB-F
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_37
Ubie_methyltran
Methyltransf_4
DREV
Motif
Other DBs
NCBI-ProteinID:
QSB41155
UniProt:
A0ABX7K330
LinkDB
All DBs
Position
1644625..1645977
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AA seq
450 aa
AA seq
DB search
MAKQERGLRFQPTGGNRAPQIPVGKKQRLTIERLANDGRGIAFFEGRTWFVVGALAGEEV
EARVLGAHGKVVEARTERVFKASELRRPAPCAHAGRCGGCSLQHLPHDEQLALKQRMLAE
QLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRYDVKAKHLDVGFRAVASQDIVAIDDCP
VLVQALQPIMQRLPNMLRRLSKPQALGHVELFSGSSIAVLLRHMAPLSDADLVVLQEFCA
FHDAQLWLHGEGEPQPFAAGPGLGYRLQQWDLDLAYRPGDFVQVNAGVNEAMVAQALDWL
APRSDERVLDLFCGLGNFALPLARQVREVVAVEGVQAMVDRAALNAASNNLHNVQFFQAD
LSQPLSDAQWAKAGFCAVLLDPPRDGALEVVRKLATLGADRLVYVSCNPATLARDTVELV
KQGYRLKRAGILDMFPQTAHVEAMALFEAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcaagagcgaggcctgcgtttccagccaacgggcggtaatcgggcgccacaa
atcccggtcggtaaaaagcagcgcctgaccatcgagcgcctggccaatgatggccggggg
atcgcgtttttcgaaggccgcacctggtttgtcgtgggggccctggccggcgaagaggtc
gaggcgcgggtgctgggtgcccatggcaaagtggtcgaggcccgcaccgagcgggtgttc
aaggccagcgaactgcgtcgcccggcgccgtgcgcccatgccggccgttgtggcggttgc
agcttgcaacacttgccccatgacgaacagcttgccctgaaacagcgcatgctcgccgag
caattgtcccgtgttgccggggtcgagccccaggaatgggccgcgccgttgagcgggccc
gagttcggttatcgccgccgggcccgggtggccgtgcgctatgacgtcaaggccaagcac
ctggacgttggctttcgcgccgtggccagccaggacatcgtggccatcgatgattgcccg
gtgctggtacaggccttgcaaccgatcatgcagcgcctgcccaacatgttgcggcgcctg
agcaaacctcaggccctggggcatgtggagttgttcagcggttcgtcgattgcggtgttg
ctgcggcatatggcgccgctgtcggacgccgacctggtggtgctgcaagaattctgtgcc
ttccatgatgcccagttgtggctgcatggagagggcgagccgcagccgttcgcggctggg
ccgggcctgggctatcgtctgcagcagtgggacttggacctggcttaccggcctggggat
tttgtgcaggtcaacgccggggtcaacgaagcgatggttgcccaggcgctggattggctg
gcaccacgttccgacgaacgggtgctggacctgttctgcggcctgggcaactttgccctg
cctctggcgcgccaagtgcgtgaagtggtcgcggtagagggcgtgcaggccatggtggac
cgcgcggcgctgaatgccgcaagcaacaatttgcataatgtgcagttttttcaggccgat
ttgtcccagcctttgagtgatgcgcagtgggccaaagcaggcttttgtgcggtactcttg
gacccaccccgcgatggtgccctggaggttgtgcgcaagctcgccactctgggggctgat
cgcctggtgtatgtgtcctgcaatccagccacgctggcgcgggacactgtcgagttggtc
aagcaaggctaccggctaaaacgtgccgggatcctcgatatgtttccgcaaactgcgcat
gtcgaggcgatggcgttatttgaagcgagctag
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