Pseudomonas hygromyciniae: JTY93_11825
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Entry
JTY93_11825 CDS
T09404
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phyg
Pseudomonas hygromyciniae
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyg03032
]
JTY93_11825
03400 DNA repair and recombination proteins [BR:
phyg03400
]
JTY93_11825
Enzymes [BR:
phyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JTY93_11825
DNA replication proteins [BR:
phyg03032
]
Prokaryotic type
DNA Topoisomerases
JTY93_11825
DNA repair and recombination proteins [BR:
phyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JTY93_11825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QSB41969
LinkDB
All DBs
Position
complement(2679627..2680643)
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AA seq
338 aa
AA seq
DB search
MPDSSLPVDLPRDLHYVDDSQPGLSRRKLRGKFQYFDRHGQRLTDAAEIQRINALAIPPA
YTDVWICADPKGHLQATGRDARGRKQYRYHPRWREVRDSDKYSRLQEFGNALPKLRKQLQ
AQVDAPGFNREKVLATVVLLLDATLIRVGNSQYARDNRSYGLTTLRTRHVDIKGSEIQFQ
FRGKSGVEHQVSIKDRRLATVLKRCLELPGQNLFQYLDAEGERHTVSSTDVNAYLHSLTG
ADFTAKDYRTWAGSALALAVLRELAWQPESDAKKHVVEMVKNVARQLGNTPAVCRKCYIH
PAVLEHFSLGHLAKLPKPRVRKGLKAEEVGLAMFLEQL
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactccagcctgcccgtcgacctgccccgtgacctgcattacgttgacgacagt
caaccgggcttgagccgccgcaaactgcggggcaagttccagtatttcgatcgccacggc
caacgcctgaccgacgccgccgaaatccagcggatcaacgccctcgccatcccgccggcc
tataccgacgtatggatctgcgccgaccccaagggccatctgcaagcgaccgggcgtgat
gcccgaggccgcaagcaataccgctatcacccacgctggcgggaagtacgcgacagcgac
aagtattcgcggctgcaggaattcggcaatgcgctgcccaaattgcgcaagcaactgcaa
gcccaagtcgatgcgccagggttcaatcgggagaaagtcctggccaccgtggtgctgttg
ctcgatgccacgctgatccgcgtcggcaatagccaatacgcccgcgataaccgctcctac
ggcctgaccaccctgcgcacccgccacgtagatatcaagggcagcgaaatccagttccag
ttccgtggcaagagcggtgtcgagcatcaggtcagcatcaaggatcggcgcctggcgacc
gtgctcaaacgctgcctggagttgccggggcagaatctgttccagtacctggacgcagaa
ggcgagcggcataccgtcagctccaccgacgtcaacgcgtacctgcacagcctcactggc
gcggactttaccgccaaggactatcgcacctgggccggcagcgcactggccctggcagtg
ctgcgcgaactggcgtggcaaccggagtcggatgccaaaaagcatgtggtggagatggtc
aagaatgtcgcccggcagttgggcaacaccccggcggtgtgccgcaagtgttacatccac
cccgccgtgctggagcacttcagcctgggccatttggcaaagctgcccaagcccagggtg
cgcaagggcttgaaggccgaagaagtggggctggcgatgtttcttgagcaactgtag
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