Pseudomonas hygromyciniae: JTY93_18135
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Entry
JTY93_18135 CDS
T09404
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phyg
Pseudomonas hygromyciniae
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyg03032
]
JTY93_18135 (topA)
03400 DNA repair and recombination proteins [BR:
phyg03400
]
JTY93_18135 (topA)
Enzymes [BR:
phyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JTY93_18135 (topA)
DNA replication proteins [BR:
phyg03032
]
Prokaryotic type
DNA Topoisomerases
JTY93_18135 (topA)
DNA repair and recombination proteins [BR:
phyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JTY93_18135 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QSB38186
UniProt:
A0ABX7JS31
LinkDB
All DBs
Position
complement(4081076..4083697)
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLSPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIESEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVGAGEFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDVMKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPENGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagcctgctgccaagcgcggcaaggcggctgcgggcgaa
ggtccggtgctctcgcctaaagagaaggcgcgtaagcagctggtctcgcgcatgggtgtg
gacccggaccatggctggaaggccaagtacgaaatccttccaggcaaggaaaaggtcatc
gaggagctgcgccggctcgccaaggatgctgacaccatctatctcgcaacggacttggac
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggggatgacagccgc
tataaacgcgtggtgttcaacgaaattaccaagaaggcgatccaggaagccttctccaag
ccgggcgaactggacattgatcgcgtcaatgcccagcaggctcgacgcttcctcgaccgc
gtcgtcggctacatggtctcgccactgctgtgggccaagatcgctcgtggcctgtccgct
ggccgtgtgcaatcggtcgcggtcaagttggtggtggagcgcgagcgcgagatccgtgcg
ttcatccctgaagagtactgggaagtccacgccgacctcgggaccgccaagggcgctacc
gtacgctttgacgtagcccgcgagaaaggcgaggccttcaagccgctcaacgaagctcag
gccatggccgcgctggaaaagctcaaggcttccagctacagcatcgtcaagcgtgaagac
aagcccaccagcagcaagccgtcggcaccgttcatcacttccaccctgcaacaggccgcg
agcaaccgcctgggctttggggtgaagaagacgatgatgatggcccagcgtctgtacgaa
gcgggctacatcacttacatgcgtaccgactccaccaacctgtcggtggacgcggtggcg
atggcgcgtacttatattgaaagcgagttcggcaagaagtacctgccggagaagccaaac
gtctatagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccctccgatgcc
aataccgagccaagcaaactcagtggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctggcttgccagatgctgccggcgcaatacctgtccacgactgtc
accgtgggtgccggggaattcgagctgcgtgccaagggccgtatcctcaagttcgacggc
tacacccgggtgatgccgcaaatcgccaagccaggcgacgacgacgtgttgccggacatg
gcccagggcgatgtgatgaagctgatcaagcttgatccgagccagcacttcaccaagccg
cctgcgcgttattcggaagccagcctggttaaggagatggagaagcgtggcattggtcgt
ccttcgacctacgcggcgatcatttccaccatccaggaccgtggctacgtggccctgcat
aaccgtcgtttctattcggaaaagatgggcgatatcgttaccgagcgtttgtctgagagc
ttctccaacctgatggactacggctttaccgccggcatggaggagaacctcgatgacgtg
gcccagggcgagcgtgactggaaaaacgtactcgacgagttctatggcgacttcaagaaa
aaactcgaagtagccgagagcccggaaaacggcatgcgcgccaaccagccggtgatgacg
gatattccgtgcaccacctgcgggcggccgatgcagatccgcaccgcgtctaccggtgtg
ttcctgggttgctcgggctatagcctgccgcccaaagagcgctgcaaggccacggtcaac
ctggtaccgggtgatgaaatcgccgccgacgacgagggtgaatccgagtcgctggtgttg
cgtggcaagcaccgttgcccgatctgcagcacggccatggatgcctacctgctggatgag
aagcacaagctgcatatctgcggtaacaacccggattgcaacggctacgagatcgaagaa
ggcacctatcgcatcaagggctacgaaggtccgagcctggagtgcgacaagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcccgagctcaagtgcgagaaggtcaacgacacctacatcctgcgtgacggcgct
tcgggcctgttcctggccgccagccagttcccgaaaaaccgcgagacccgtgcaccattg
gtgatggagatcgtgccgcacaaggatgagatcgatccgaagtaccacttcctgtgtgaa
gcgccgaagaaggatcccgatggtcgtccggctgtgatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtggacggcaagcctacgggctggaaggcgttctacgac
ggcggtaagtggaaggtcgaggacaagcgccagggcgcttga
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