Pseudomonas hygromyciniae: JTY93_24075
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Entry
JTY93_24075 CDS
T09404
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
phyg
Pseudomonas hygromyciniae
Pathway
phyg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JTY93_24075 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyg03021
]
JTY93_24075 (rpoB)
03400 DNA repair and recombination proteins [BR:
phyg03400
]
JTY93_24075 (rpoB)
Enzymes [BR:
phyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JTY93_24075 (rpoB)
Transcription machinery [BR:
phyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JTY93_24075 (rpoB)
DNA repair and recombination proteins [BR:
phyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JTY93_24075 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
QSB39207
UniProt:
A0ABX7JXY4
LinkDB
All DBs
Position
complement(5340037..5344110)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LSLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKSLDVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRKEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgcggtgttacgtacgccgtacctttg
cgggtaaaagttcgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccgttgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaagctcctgtactccgcgcggatc
attccgtaccgtggttcgtggttggacttcgagttcgacccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgctcggctatacc
accgagcaggtgctggacgctttctacaccaccaacgtcttcagcctgaaggatgaaacc
ctcagcctggaactgattgcttcgcgtctgcgtggtgaaattgcggtcctggacatccag
gatgagaagggcaaagtcattgttgaggctggccgtcgtattactgcgcgccacatcaac
cagatcgaaaaagccggtatcaagtcgctggacgtgcctctggactatgtcctgggtcgc
actaccgccaaggtcatcgttcacccggctacaggcgaaatcctggctgagtgcaacacc
gagctgaacaccgagatcctggcaaaaatcgccaaggctcaggttgttcgcatcgagacc
ctgtacaccaacgatatcgactgcggtccgttcgtctccgacaccctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagcca
cctaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgttgcggtcctgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccataagcgccgtgtttctgcactgggcccg
ggcggtcttactcgtgagcgtgctggctttgaagtgcgtgacgttcacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactctctg
gctgcctatgcgcgcaccaaccagtacggcttccttgaaagcccgtaccgcgtggtgaaa
gacgccctggtcaccgacgagatcgtcttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctgatcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgcccaagcaggtagtttcggttgcagcgtcgctgatcccgttcctggaacacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccgaccctgcgtgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagctcgcgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaactggcgaagccggtgttgacatctacaacctgactaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagaaagggtgat
cgcgttcagcgtagtgacatcatggccgacggtccgtccaccgatatgggtgagctggct
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaagaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcgcgtgacaccaagcttgggcctgaggaaatcaccgcagacatcccg
aacgtgggtgaagctgcgctgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgctggcgacatcctggtcggtaaggtcactccgaaaggcgagacgcaactg
actccggaagagaagctgctgcgcgctattttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaagggcactgtcatcgacgtacaggtcttcacc
cgtgacggcgtcgagcgtgatgctcgtgcactgtccatcgagaagacccagctcgacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttccgcactggtaggccacaaggccgaaggcggcgcaggtctgaagaaaggtcaggac
atcaccgacgaaatcctcgacggtcttgagcatgggcagtggttcaagctgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgccgccgt
ctgctggacgacaagtttgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggctaaaggt
ctgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgcagacctgcgtaag
ttcctgcacgagatctacaacgagatcggcggccgcaaagaagagctggacactttctcc
gaccaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctacccca
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggtaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
