Pseudomonas hygromyciniae: JTY93_24415
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Entry
JTY93_24415 CDS
T09404
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
phyg
Pseudomonas hygromyciniae
Pathway
phyg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JTY93_24415 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyg03021
]
JTY93_24415 (rpoD)
Transcription machinery [BR:
phyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JTY93_24415 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
QSB39263
UniProt:
A0ABX7JWX7
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All DBs
Position
5409596..5411446
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AA seq
616 aa
AA seq
DB search
MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGITPPAAE
IPPPVDPKAVKADDETDDDEAEASTDDEEEVESGPDPIIAAQRFGAVSDQMELARKALKK
HGRGSKQATAELLALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRTDFLRQFPGNEVDESWTDALAKGKSKYAEAIGRFQADIVRCQQKLTALQTETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcgtccttggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatttcagatccg
gaacaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagct
gcgccagataaggattctcttatgctggcggacgccgataccgacgaggccgccgctgaa
gaagctgctgccgcgctggctgcagtggagaccgatatcggtcgcaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtacggttgagctgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggcatccgcgaagtgatgggcgcaattgcgcacttcccc
ggcacggttgaccacattctctccgagtacacccgcgttaccaccgaaggtggccgcctg
tccgacgtcctgagcggttatatcgacccggacgacggcattacgccgcctgctgccgaa
ataccgccgcctgtcgacccgaaggccgtgaaagcggacgacgaaaccgacgacgacgag
gctgaagccagcaccgacgacgaagaagaagtcgaaagcggcccggatccgatcatcgca
gcccagcgctttggcgcggtctccgatcagatggaactggcgcgcaaggccctgaagaag
catggtcgtggcagcaagcaggcaaccgccgaactgctggccctggctgagctgttcatg
ccgatcaaactggtgccgaagcaattcgaaggcctggttgagcgggttcgtagcgccctt
gagcgtctgcgtgcacaagagcgtgcgatcatgcagctctgtgtccgtgatgcgcgcatg
ccgcgtaccgacttcctgcgccagttcccgggcaatgaagttgacgaaagctggaccgac
gcactggccaagggcaaaagcaaatacgctgaagccattggtcgcttccaggccgacatc
gttcgttgccagcagaagctgactgcattgcagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggcgaggccaaggcccgtcgcgcgaagaaa
gagatggttgaagcaaacttgcgtctggtgatctccatcgccaagaagtacacaaaccgt
ggcttgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaggctgtggac
aagttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagaccatcaacaagctcaaccgcatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggtgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaacgccgattggtgatgacgaagactcc
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccaccgtt
gagagcctcaaagaagcgacacgcgacgtactgtccggcctcactgcccgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacaccctcgaggaagtcggt
aagcagtttgacgtgacccgcgagcggatccgtcagatcgaagccaaggcgctgcgcaag
ttgcgccacccgacgagaagcgagcatttgcgctccttcctcgacgagtga
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