Phyllobacterium sp. 628: HB779_14745
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Entry
HB779_14745 CDS
T08362
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phyl
Phyllobacterium sp. 628
Pathway
phyl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HB779_14745 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyl03021
]
HB779_14745 (rpoC)
03400 DNA repair and recombination proteins [BR:
phyl03400
]
HB779_14745 (rpoC)
Enzymes [BR:
phyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HB779_14745 (rpoC)
Transcription machinery [BR:
phyl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HB779_14745 (rpoC)
DNA repair and recombination proteins [BR:
phyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HB779_14745 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QND53022
LinkDB
All DBs
Position
complement(2662430..2666638)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPVQAFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKGIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDSFTA
LIGAEAIHELLASMDLEKIAGTLREELATTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKIVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGLPVIVPSQDMVLGLYYLSIVAAKEPGEGMAFADIGELHHAIG
SGAVTLHTKIKGRFKSIDADGKPTSKIFDTTPGRMIIGELLPKHHNVPFDICNQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMIIPETKEKLVAETVAL
ATEYEQQYNDGLITQGEKYNKVVDAWGKCTEKVADEMMARIKAVEFDPVTGRQKQMNSIY
MMSHSGARGSPSQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVISVDCGTTTGLTMQPIVDAGQVVATIGQRVLGRT
ALEDILHPLTGDVLVTGGNIIDEFDIDAIEKAGVQSIRIRSALTCETRGGICAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDQSFLEASYEGTVQIRNRN
VVRNSDGHLVVMGRNMAVVILDATGKERATHRVTYGSRIYVDDGDTVKRGQRVAEWDPYT
RPVMTEVEGHVEFEDMVDGLSVSETTDESTGITKRVVIDWRSTPRGSDLKPCIVVKGKDG
KVLKLAKGGDARFQLSVESILSVEPGSHVKAGDVLARIPMESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIEGTVRFGRDYKNKRRIVIEPNDETLEPVEYLIPKGKPFHLQDGDAIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVE
ITESGDTGFIAGDHVDRIELDEINERLEEDGKKSGYGTPVLLGITKASLQTPSFISAASF
QETTRVLTEAAVAGKMDALQGLKENVIVGRLIPAGTGGTVKQIRRIAGARDELIIDERRK
ESGAGAAKVDAMLTDMTGTPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgtacaggcattcgattcc
atccggatttcgattgccagccctgagaagattctgtcctggtcatacggtgagatcaag
aagccggagacgatcaactaccgcacgtttaagccggagcgggatggtctcttctgcgct
cggatcttcgggccgatcaaggactatgaatgcttgtgcggcaagtacaagcgtatgaag
tataagggcatcatctgcgaaaagtgcggcgtcgaagtgacgttgtcgcgcgttcgccgt
gagcgcatgggccatatcgaactcgcagctccggttgcgcacatctggttcctgaagtcc
ctgcctagccgtatcggcactctgctcgacatgacccttaagggtatcgagcgcgttctc
tatttcgagaactacatcgtgaccgagcctggcctgacatctctgaaagagcatcagctg
ctttcagaagaagaatacatgatcgctgtcgatgagttcggtgaagattccttcacggca
ctgatcggcgcggaagctattcatgagcttctggcttccatggatctggagaagattgcc
ggcaccctgcgtgaggaactggcaacaacgacttccgacctgaagcagaagaagctgatg
aagcgtctgaagatcgtcgaaaacttcatggaatcgggtaaccgtccggaatggatgatc
atgaagatcgttccagttattccgccggacctgcgtccgcttgttccgctggatggcggc
cgttttgcgacgtctgatctgaacgacctctatcgtcgtgtgatcaaccgtaacaaccgt
ctgaagcgcctgatcgaactgcgcgcgcctggcatcatcatccgcaacgagaagcgcatg
cttcaggaatcggttgatgctctgttcgacaacggtcgtcgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgatatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgattattccggccgttcggttatcgtgaccggt
cctgaattgaagctgcaccagtgcggtctgccaaagaagatggcgctcgaactgttcaag
ccgttcatctatgcccgtctcgacgccaagggttattcctcgaccgtcaagcaggcgaag
aaactggttgaaaaggagaagccggaagtctgggatatccttgacgaagtcatccgcgag
cacccggttctgctgaaccgtgcgccgacgctgcaccgtcttggcatccaggcattcgaa
cccatcctgatcgaaggcaaggcaatccagctgcatccgctcgtctgtaccgctttcaac
gcggatttcgacggcgatcagatggctgttcacgttccgctttctctggaagcgcagctt
gaagcccgcgttctgatgatgtcgacgaacaacatcctgcaccctgcaaacggtctgccg
gttatcgttccgtcacaggacatggttctgggcctgtactatctgtcgatcgttgcggct
aaggagccgggcgaaggcatggcctttgccgatatcggtgaattgcatcacgccattggc
agcggtgctgtgaccctgcacaccaagatcaagggccgcttcaagagcattgatgcggac
ggcaagccaacgtcgaagattttcgacacgacgcctggccgtatgatcatcggtgaattg
ctgccgaagcaccacaatgtgcctttcgacatctgcaatcaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctatcgccattgcggacagaaagagacggtcattttc
tgcgatcgcatcatgcagcttggcttcagccatgcttgccgtgccggtatttccttcggc
aaggacgacatgatcattccggaaaccaaggaaaagctggttgctgaaaccgttgccttg
gccaccgaatatgaacagcagtacaatgacggcctgatcactcagggcgaaaagtacaac
aaggtcgtcgacgcctggggcaagtgcaccgagaaggtcgctgacgaaatgatggcccga
attaaggccgttgagttcgatcctgttactggtcgccagaagcagatgaactcgatctac
atgatgtcgcattccggcgctcgtggttcgccaagccagatgcgtcagctgggtggtatg
cgcggattgatggccaagccttcgggcgaaatcatcgaaacgccgatcatttcgaacttc
aaggaaggcttgaccgtgaacgagtacttcaactcgacacacggtgcccgtaagggtctt
gccgataccgccttgaagacggctaactccggttacctgacacgccgtctcgttgacgtc
gcacaggattgcattgtcatctcggtggattgcggcacgacaacgggcctcaccatgcag
ccgatcgttgatgccggtcaggtcgttgcgaccattggccagcgtgttctcggccgtacg
gcactggaagacatcctgcatccgctgacgggtgacgttcttgtcaccggtggcaacatt
atcgacgagttcgatattgatgccattgaaaaggcaggcgttcagtccatccgcatccgt
tcggctctcacctgtgagacccgcggcggcatctgcgccaagtgctacggccgcgatctg
gcccgtggtactccggtcaaccagggtgaagctgtcggcgttatcgctgctcagtcgatc
ggtgagcctggcacgcagctgacgatgcgtacgttccaccttggtggtacggcgcaggtt
gtggatcagtcgttcctcgaagccagctatgaaggcactgtgcagatccgtaaccgcaat
gtggtgcgtaactctgatggccatctggtcgtcatgggccgtaacatggctgttgtcatt
cttgatgcgacaggcaaggaacgtgcaacacaccgtgttacctacggttcgcgcatctac
gtcgatgatggcgatacggttaagcgcggccagcgtgttgccgagtgggatccttatacc
cgcccggtcatgacggaagtcgaaggtcatgtcgaattcgaagacatggtcgacggtctt
tccgtttcggaaaccacggatgagtccacgggcatcaccaagcgcgtggttatcgactgg
cgttcaacaccacgcggttcggatctgaagccatgcatcgtggtcaagggcaaggacggc
aaggttctgaaactggcaaagggtggcgatgcacgcttccagctgtcggttgaatcgatc
ctttcggttgagcctggttcccatgtgaaggcgggtgacgttcttgcccgtattccaatg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gcacgccgtccaaaggatcatgcgatcatcgcagagatcgaaggtacggttcgtttcggc
cgcgactacaagaacaagcgccgcatcgttattgaaccgaacgacgagacgctcgagcct
gttgaatatctgatccccaagggcaagcctttccatcttcaggatggcgatgcgatcgaa
aagggcgattatatcctcgacggcaatccagcgccgcacgacattctggccatcaagggc
gtggaagcacttgcttcgtacctcgtcaatgaaatccaggaagtctatcgtctgcagggc
gttctgatcaacgacaagcacatcgaagtgattgttcgtcagatgttgcagaaggtcgag
atcaccgagtcaggtgacacaggcttcatcgccggtgatcacgttgaccggattgaactt
gacgagatcaacgagcgtcttgaggaagatggcaagaagtcgggctatggcactccagtg
ctgctcggcatcaccaaagcctcgctgcagacaccgtcgttcatctctgctgcgtccttc
caggaaacaacacgcgtcctcacggaagctgctgttgccggtaagatggatgcgctgcag
ggcctgaaggaaaacgtcatcgtgggccgtcttatcccggccggtaccggtggcacggtc
aagcagatccgccgcattgccggtgcccgcgatgaattgatcatcgatgagcgccgcaag
gaaagcggagccggtgctgccaaggttgacgccatgttgaccgacatgacaggcaccccg
gctgaataa
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