Phyllobacterium sp. 628: HB779_15340
Help
Entry
HB779_15340 CDS
T08362
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phyl
Phyllobacterium sp. 628
Pathway
phyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HB779_15340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyl03019
]
HB779_15340
03009 Ribosome biogenesis [BR:
phyl03009
]
HB779_15340
Enzymes [BR:
phyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HB779_15340
Messenger RNA biogenesis [BR:
phyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HB779_15340
Ribosome biogenesis [BR:
phyl03009
]
Prokaryotic type
rRNA processing factors
HB779_15340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Damicornin
TFIID_NTD2
Motif
Other DBs
NCBI-ProteinID:
QND53123
LinkDB
All DBs
Position
2783741..2786671
Genome browser
AA seq
976 aa
AA seq
DB search
MSDKMLIDASHQEETRVVVVRGNRIEEFDFESEHKKQIKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIDAEAEAASQDEDHEENAGEQRTRDRNDRGQ
RNRRRSRRGTRQNDDSVKLDASDDAAADEAGDDHESSEQSASDENPSSEDNGGQTIAAAI
DADVISEAVIIDADEADTDGDEKSSEGETHSRRSKRRNQPDDKEEPHDELDEVESVGAED
AMEEVPTHQRFQRRQYNIQDVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPN
TARGGGISRKITSIQDRKRLKDIVKDLEVPKGMGVILRTAGAMRTKPEVKRDYEYLMRLW
ENVRSLTLASSAPTLVYEEGSLIKRSIRDLYNKDITEILVAGENGYREAKDFMRMLMPSH
AKVVQPYREPTPIFARNGIEAQLDRMLQPQVTLKSGGYIIINQTEALVAIDVNSGRSTRE
HSIEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEENRNNRAVEKRMKDCLKDDRA
RIQVGRISHFGLLEMSRQRIRASVLESTTQICSHCGGTGHVRSASSIALHVMRSIEEYLL
RHSQNNIIVRTTVATALYVLNHKRQNLADLETRFGLTISIEADDSVGAQHFAIDKGSIAL
GPIVPLTETPTLGIVDDFDESDPVIDDVDDDAEVETQSGETTKTGDNDESSRKRRRKRRR
RGGRDRQEAAAGEPGQAVRSDNDADDSDMPAVEGEDAAATKAREEENERRKKRRRGRRGG
RKNRRPEDGDDHQVAARSVPDAEPVFVSIPLPDFSKPAAVETKADAVEESVFVETATVEV
VAVEEAPAKKPARRKPRAKAGAAPVETVAETAPVEVAPAETEAPAKPKRAPRKTAKKAVA
VETVVEEAAPAAVEAPVAAPVEVKPEPAPEPVVAPKPEPAKVDNSTPVVTSTATKEKKAE
GDAPTKRGWWQKKGFF
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaaaatgctaatcgacgcctcccaccaggaggaaacgcgcgttgtcgtggtt
cgcggcaaccgaattgaagaatttgactttgagtcggaacacaagaaacagatcaaaggc
aatatctatctggcgcgtgtcacacgtgtagaaccatcgcttcaggcagctttcgttgaa
tatggcggtaatcgccatggctttctcgccttcagcgaaattcaccctgattactaccag
atccccgttgcggatcgtcaggcgctgatcgacgcggaagccgaggcagccagccaggac
gaagaccatgaggaaaatgccggtgaacagcgcacccgcgatcgcaatgatcgtggtcag
cgcaatcgccgccgcagccgtcgtggcacccgccagaacgatgattccgtaaagctcgac
gcttccgatgacgctgcagccgacgaggctggcgacgatcatgaatcatccgaacagagt
gcatcggatgaaaacccctcctccgaggataatggcggccagacaattgctgcggccatc
gatgccgatgtgatttccgaagccgtgataatcgatgccgatgaggcagacaccgatggc
gacgaaaagtcgagcgaaggtgaaacccattcccgccgttccaagcgtcgcaaccagccg
gacgacaaggaagaaccgcatgacgaactcgacgaagtcgagtctgtcggtgccgaagat
gccatggaagaagttccgacgcatcagcgcttccagcgccgccagtacaacattcaggac
gtgatcaaacgccggcagattctgctggttcaggtcgtcaaggaagaacgcggcaacaaa
ggcgctgcgctcacaacctacctttcgcttgccggacgttattcggtcctcatgccgaac
acagcccgtggcggcggcatttcgcgcaagatcaccagcattcaggatcgcaagcgcctg
aaggatatcgtcaaggatctcgaagtgccgaaaggcatgggggtcatcctgcgcaccgcc
ggtgccatgcgcaccaagccggaagtcaagcgcgactacgaatatctgatgcgcctgtgg
gaaaatgtgcgcagccttacccttgcatccagcgcgcctacccttgtttacgaggaaggc
agcctgatcaagcgttcgatccgcgacctctataacaaagacatcacggaaatcctcgtc
gctggtgaaaatggctaccgcgaggccaaggatttcatgcgcatgctcatgccgagccat
gccaaggttgtgcagccctatcgggagccgacaccgatctttgcccgtaatggcattgaa
gcgcagcttgaccgtatgctgcagccgcaggtaacgctcaaatcaggcggctatatcatc
atcaaccagaccgaagcgctggttgccatcgacgtcaactccggacgatcgacccgtgaa
cattcgattgaagacacggcattacagacgaatcttgaagcagcagatgaagttgcgcgc
caattgcgcctgcgcgatcttgccggtctgatcgtcatcgatttcatcgacatggaagaa
aaccgcaacaaccgtgcggttgaaaagcggatgaaggattgtctgaaagacgatcgcgcc
cgcattcaggttggccgcatctcgcatttcggcctgctggaaatgtcacgccagcgcatc
cgcgccagcgttctggaaagcaccacgcagatctgctcgcattgcggcggtaccggccat
gtgcgttccgcttcttccatcgcattgcatgtcatgcgctcgatcgaggaatacctgctg
cgccattcgcagaacaacatcatcgtgcgcacaaccgttgccacggcgctctacgttctc
aaccacaagcgtcagaaccttgccgatctcgagacccgcttcggtctgaccatcagcatt
gaggctgatgacagtgtcggcgcccagcatttcgccatcgacaagggctccattgcgctt
ggtccgatcgttccgctgacggaaacaccgactcttggtattgtcgatgacttcgacgag
agcgatccagttatcgatgatgtggacgacgatgccgaagtcgagacccagtccggcgaa
actaccaagaccggtgacaacgatgaatcatcgcgcaagcgccgccgcaagcgtcgccgt
cgtggtggccgtgaccgtcaggaagccgcagctggtgaacccggtcaggccgttcgcagc
gacaacgatgccgacgattcggacatgcctgctgttgaaggcgaagatgcagccgcgacc
aaggcacgcgaagaagaaaacgaacgccgcaagaagcgccggcggggccgtcgcggtggc
cgcaagaaccgccgcccggaagatggcgacgatcatcaggtcgcagccagatccgttcca
gacgctgaaccagtattcgtcagcattccgctgccggacttcagcaagcctgctgcggtt
gaaaccaaggcagatgccgtcgaagagagcgttttcgttgaaaccgccaccgtcgaggtt
gttgccgtagaagaagcgcctgccaagaagcctgcccggcgcaagccgcgcgccaaggct
ggtgcggcacctgttgagaccgttgccgaaacggcaccggttgaagttgctcctgctgaa
accgaagcaccggccaagccgaaacgtgcgccacgcaagaccgccaagaaagcggtcgcc
gtggaaaccgtagtcgaagaagcagcacccgctgccgttgaagcacctgttgcagcaccg
gtcgaagtcaagccagaaccggcaccggagcctgttgttgcgccaaagccggagccagcc
aaggttgataacagcacgcctgttgtgacttcgactgcgacaaaggaaaagaaggcggaa
ggcgacgcgccgacaaaacgcggctggtggcagaaaaaaggtttcttttga
DBGET
integrated database retrieval system
