Phyllobacterium sp. 628: HB779_16040
Help
Entry
HB779_16040 CDS
T08362
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phyl
Phyllobacterium sp. 628
Pathway
phyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HB779_16040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyl03019
]
HB779_16040
Enzymes [BR:
phyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HB779_16040
Messenger RNA biogenesis [BR:
phyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HB779_16040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QND54256
LinkDB
All DBs
Position
complement(2920323..2921657)
Genome browser
AA seq
444 aa
AA seq
DB search
MGLNAILLKAVEAAGMATPKPIQEQAIPAQLAGQDILGIAQTGSGKTAAFSLPILQKILT
IGDKRKGKTARALILAPTRELAVQIEETVRKLSKGAHISTALVLGGVSRVAQINKMQGGV
DVLIATPGRLTDLVRDNRIDLSETRWLVLDEADRMLDMGFINDVKRIAKGTHRDRQTALF
SATMPKEVATLAESLLRNPIRVEVAPQGTTAAEIKQVVHMIPTKQKKQVLSAMLKDETLS
SVIVFTRTKHGADAVTRVLEKDGYDVAAIHGNKSQNARQRALNGFKDGSVRVLVATDIAA
RGIDVVGISHVINFDLPDEPESYVHRIGRTGRNGASGNAITLYDPAEEASKFKAVERVTR
MRLPLADSPIDLSSLPARVASNDQRPARREGGNGAPGKKPHRGQGAGKPREARGEKVWTN
DGGSPEQKRPFRRNKRKSFGAKAA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgaatgccatcctgctgaaagcagtcgaggcagctggaatggctactcccaag
ccaatccaggaacaggctatcccggcacaactcgccggtcaggacattctcggcatcgcc
cagactggctccggcaagacggcggctttcagcctgccgatcctgcagaagatcctgacc
atcggcgataagcgcaagggcaaaactgcccgtgcgctcattctggctccaacccgcgaa
ttggccgtgcagatcgaagagacggtccgcaagctgtccaagggtgcgcatatctccacc
gcgcttgtgctcggcggcgtatcgcgcgtggctcagatcaacaagatgcagggcggcgtt
gacgttctcatcgcaactcccggccgcttgaccgatctcgtgcgcgacaaccgcatcgat
ctgtccgagactcgctggctcgttctggacgaagccgaccgtatgctcgacatgggcttt
atcaatgatgtgaagcgcattgccaagggcacacaccgcgatcgccagaccgcgctgttc
tccgcaaccatgccaaaggaagtcgcaacgctggctgaaagcctgctgcgcaatccgatc
cgtgtcgaagtggctccacagggaaccaccgctgccgagatcaagcaggtcgtgcacatg
atcccgaccaagcagaagaagcaggttctttcggccatgctgaaggatgagaccttgtct
tcggtcatcgtgttcacccgtaccaagcacggtgccgatgcggtcacccgtgttctggaa
aaggacggctatgacgtggctgccattcatggcaacaagtcgcagaatgcccgccagcgc
gcgcttaacggcttcaaggacggttctgtccgtgttctcgttgccaccgacattgccgca
cgcggtattgatgttgtcggcatcagtcacgtgatcaatttcgatctcccggatgagccg
gaaagctacgtgcaccgtatcggccgcacaggtcgtaatggtgcatcgggcaatgcgatc
actctgtacgatccggctgaagaagcgtcaaagttcaaggccgtcgagcgcgttacacgt
atgcgcctgccgcttgccgattcgccgattgatctgtcgagcctgccggcacgtgttgcc
agcaacgatcagcgtccagctcgccgcgaaggcggcaatggcgcaccgggcaagaagccg
catcgcggtcagggcgccggcaagccgcgtgaagcacgtggtgaaaaagtctggaccaat
gatggcggttcgcctgagcagaagcgtccattccgccgcaacaagcgcaagagctttggt
gccaaggctgcataa
DBGET
integrated database retrieval system
