KEGG   Phyllobacterium sp. 628: HB779_21000
Entry
HB779_21000       CDS       T08362                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
phyl  Phyllobacterium sp. 628
Pathway
phyl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phyl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HB779_21000 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phyl03400]
    HB779_21000 (ligD)
Enzymes [BR:phyl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HB779_21000 (ligD)
DNA repair and recombination proteins [BR:phyl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HB779_21000 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QND54403
UniProt: A0A7G6SIS1
LinkDB
Position
p_2:85850..88396
AA seq 848 aa
MAVLETYHQKRDFSKTREPKGSKGKKAGNSFVIQKHDATRLHYDLRLEMDGVMKSWAVTR
GPSLVPAEKRLAVHVEDHPIEYNAFEGTIPKGEYGGGTVIIWDRGYWTPVDDAAKGYQKG
HLEFELHGEKLHGRWHLVRMQRKPREKRENWLLIKSEDDAARDASDPDILEERPESVKTG
RVIDEVAGEEPGWSSKTGKISGKKRHLKSPKTPASKTEQVELDPSELKGSKKGALPRFIE
PTLATLSQKPPAGAEWIHEVKFDGYRLQAHIHAGKIKLFTRTGLDWTAKFGKELVSAFQA
LPIGNGLIDGELVVENASGASDFSALQAALSNDDSSCFRFYAFDLLYLDGYDLRAAPLIE
RKSLLQQVVGSDEGLIKYSGHFEEDGKLVLSHSCRLGLEGIVSKQRDAPYRSGRVKTWIK
SKCSSRQEFVIAAYTPSSASRKAIGSLVLGVYAKGKLEHVGRVGTGFTAQSAGELFHKLS
GLRIQESPFAEKLSAIESRNIRYIRPELVAEVEFRGWTADGSLRHASFRGLREDKVATDV
IRETRKMSATPKQPKRTVQLTHPDRIYWPDAGVTKEGLADYYTEAWRYIEPFIAGRPLAL
LRGPSGIDGQLFFQKHAWKGLNANIDLIKDPKDKAGEPLISINDLDGLMALVQSAVLEIH
PWGSTLKDWEHPDMIIMDLDPGPDVGWQTVIDAALETRDRLKQFGLKSFVKTSGGKGLHV
VAPLQPKATWPTVKAFTKAIADAMAADDPDHYVATVTKSKRQGKILIDYLRNQRGSTAVA
PYSTRARAGAPVSMPLGWDELDLSIGPAYFTVGNAMTRIDALASNPWEDFHKAAKPLPAA
KPGRKPSS
NT seq 2547 nt   +upstreamnt  +downstreamnt
atggccgtattggagacataccatcagaagcgcgatttttcgaaaacgcgtgaacccaag
ggctcgaaaggcaagaaggccggaaacagtttcgtcatccagaaacacgatgctacgcgc
ctgcactatgatctgcggctggagatggacggtgtgatgaaaagctgggctgttacacgc
ggcccaagtcttgtgccagctgaaaaacgtttagccgttcacgtggaagatcatccgatt
gaatacaatgcgttcgaggggaccattcccaagggcgaatatggtggcggcactgtcatc
atttgggatcgcggttattggacgcctgttgatgacgcggccaagggatatcaaaagggt
catctcgaattcgagctgcatggtgagaagctgcatggccgctggcatcttgtgcgcatg
cagcgcaagccacgggaaaagcgtgagaattggctgcttatcaaatccgaagacgatgcg
gcacgggacgcaagcgatcctgatatactggaagaacggccggaatctgtcaaaacgggc
cgtgtaatcgatgaagtcgcgggcgaagagccgggatggtcgtcaaaaactgggaagatt
agcggaaaaaagcggcaccttaagtcgccgaagacaccggcatcaaagactgagcaggtc
gaactcgatccttccgagttgaaagggtccaaaaagggagcgctgccgcgcttcattgag
ccaacccttgccacgctgtcacaaaagccacccgcaggcgcagaatggattcacgaggtc
aagtttgatggctacagactgcaggcgcatatccatgcggggaagatcaagcttttcacc
cggactggcttggactggacggcaaaattcggcaaggaattggtttccgcatttcaggcg
ctgcctattggcaatgggctcatcgatggcgagctcgttgtcgaaaacgcctccggcgca
tcagacttttccgctctgcaggcagcgctgagcaatgatgacagcagctgtttccgtttc
tatgccttcgatctgctttacctcgatggctacgacttgagagctgcaccattgatcgaa
cgaaaatcgctcttgcagcaggttgtcggatcggacgaaggcttgatcaaatacagcggt
catttcgaagaggatggcaaacttgtcctgtcccattcatgccgccttggtctggaaggc
atcgtatccaaacagcgcgatgctccctaccggtcgggacgcgtgaagacatggataaaa
tccaaatgctcgtcgcggcaggaatttgtcattgccgcatacacgccgtcatcggcatca
cgcaaggcaatcggctcactggtccttggcgtctacgcaaaaggcaagcttgaacatgtg
ggtcgtgtcggcaccggttttactgcacaatcggcgggagagctgtttcataaactcagc
gggctgcgcattcaggaaagtccctttgctgaaaagctgagtgcgatcgagagcaggaat
atccgttacatcaggccggagcttgtagctgaagttgagtttcgcgggtggacggccgac
ggaagcctgcgtcacgcttcgtttcgcggattacgggaagacaaggtagcaacggacgtc
atcagggaaacgcgcaaaatgtctgccacacccaaacaaccgaaacggacagtccaactc
acgcatcccgaccgtatttattggccggatgcgggtgtcaccaaggagggactggctgat
tattacacggaggcctggcggtacatcgaacctttcattgcaggcaggccgctggcgctt
ttgcgcggtccgtccggcatcgacggacagctgtttttccagaagcatgcatggaaaggc
ctgaatgccaatatcgatctgatcaaggatccaaaggacaaggcgggcgagccgcttatc
agcatcaatgatctggatgggctcatggctctggttcaatccgccgtgctggaaatccat
ccatgggggtcaacactcaaggattgggaacacccggatatgatcatcatggatctggat
ccgggtccagatgtcggctggcagactgtcattgacgctgcattggaaacccgtgacagg
ctcaagcagtttggcctcaaatcctttgttaaaacatcaggtggaaaaggactgcatgtg
gttgcgccgctccagccgaaagccacatggccaaccgtcaaagccttcaccaaagccatc
gccgatgccatggctgccgatgatcctgaccactatgttgcaacggtgacgaaatcaaaa
cggcaggggaaaattctgattgattatctgcgcaaccaaagaggttcgaccgctgtcgcg
ccctattcgacgcgggcacgtgcaggtgcacctgtttccatgccgcttggttgggatgaa
ctcgatctttccatcggaccagcctatttcactgtcggtaacgcgatgacgcgcatcgac
gcattggccagcaatccgtgggaggatttccacaaagcggcgaagccactgccagcggca
aagcccggccgcaagccaagctcatag

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