KEGG   Pangasianodon hypophthalmus (striped catfish): 113523671
Entry
113523671         CDS       T05759                                 
Name
(RefSeq) polyadenylate-binding protein 1-like
  KO
K13126  polyadenylate-binding protein
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015  mRNA surveillance pathway
phyp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    113523671
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113523671
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phyp03019]
    113523671
   03041 Spliceosome [BR:phyp03041]
    113523671
Messenger RNA biogenesis [BR:phyp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     113523671
   mRNA cycle factors
    Stress granule specific factors
     113523671
Spliceosome [BR:phyp03041]
 Complex C
  Other components
   Complex C specific factors
    113523671
SSDB
Motif
Pfam: RRM_1 RRM_MUD2_C RRM_Nup35 RRM_ACIN1 RBD_RDR6 RRM_7 RRM_5 RRM_3 ATP-grasp_2 YflT POP1_C
Other DBs
NCBI-GeneID: 113523671
NCBI-ProteinID: XP_026765465
LinkDB
Position
Unknown
AA seq 385 aa
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVVCVCVTGPALSI
RVMTDEGGKSKGFGFVSFERHEDAQRAVDEMNGKELNGKQVYVGRAQKKGERQTELKRKF
EQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCF
SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVLNPY
QPAPPSGYFMAAIPQVHTHTHTHTA
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgaaccccagcgctcccagttaccccatggcgtctctgtacgtgggggatctgcaccct
gacgtcaccgaggccatgctgtacgagaagttcagccccgcgggtcccatcctctccatc
cgggtctgcagggacatgatgacgcgccgctcgctcgggtacgcctacgtcaacttccag
cagcccgccgacgccgagcgagctctggacacgatgaactttgacgtgattaagggacgt
cctgttcggatcatgtggtcccagagagacccctcgctgaggaagagcggcgtcgggaac
atcttcatcaagaacctcgacaagtccatcgataacaaggctctctacgacaccttctca
gcgttcgggaacatcttgtcctgcaaggtggtgtgtgatgaaaacggctctaaaggttac
ggcttcgtgcactttgagacccacgaggctgcagagagagcgatagagaaaatgaacggc
atgctgctcaacgatcgcaaagtggtgtgtgtgtgtgtaacagggcctgcactgagtatt
cgggtcatgactgatgagggtggaaaatctaaaggtttcggctttgtgagcttcgagagg
cacgaggacgcacagagagctgtggatgagatgaatggaaaggagctgaatgggaaacag
gtgtacgtgggccgggcgcagaagaaaggcgagagacagactgaactgaaacgcaagttt
gagcagatgaagcaggaccgcatgacccgctaccagggcgtgaacttgtatgtgaagaat
ctggatgatggtctggatgacgaacgtctccgcaaagagttctcaccttttggaaccatc
accagcgccaaggtgatgatggagggcggccgctctaaagggttcggtttcgtgtgtttc
tcgtctccggaggaagccacgaaggcagtgacggagatgaacggccggatcgtagccacc
aagccgctgtacgtagctctggcgcagcgtaaagaggagcgtcaggctcacctcaccaac
cagtacatgcagaggatggcgagcgtgcgcgccgtcccaaaccctgtcctcaacccctac
cagcccgctcctccatccgggtacttcatggctgccattcctcaggtacacacacacaca
cacacacacacagcatag

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