Pangasianodon hypophthalmus (striped catfish): 113523824
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Entry
113523824 CDS
T05759
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
113523824
NCBI-ProteinID:
XP_026765689
LinkDB
All DBs
Position
Unknown
AA seq
1623 aa
AA seq
DB search
MKARFWCRISLILTILALTLYSEGVKGQRAGCKNVHYDLVFILDTSSSVGKDNFEKIRQW
VANLVESFDIGEDKTRVAVVRYSDRPTTEFNLGRYKTLDEVKRAARNIRYLGGNTKTGDA
ISYTTTNIFNIQAGARPAARGIQKVAILLTDGRSQDYVLEPSTAAARAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFDAIDRIRGRLRRRLCENVLCPNMKVQGERFKPNSTSA
GLQEVPGFDLMEYFNVRDVLGEKSEPGQSSYVRLGTMPIVQQTENVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQVYDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFRSPDVEN
LFDRNWHKIGLSVHAKSVSLYLDCKHIQTLPIEEREDIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDSKQAEQETCCDLPGGPCHKQVVTEPTPILIPTPTPTSGEQKSGEHTVNCSCA
AGERGETGLPGAQGPKGEKGDPGLQGTAGPQGPKGQKGEPGKALSIKGDRGEKGDSGDPG
ETGVRGDKGERGLEGLPGLAGKQGDKGEQGVKGSAGAPGLPGPLGPQGVQGDRGHSGAPG
PKGVSGDPGKKGEKGTAGERGLPGLDGFPGKPGAPGKDGLTGLIGAPGPHGFKGEKGERG
PAGIPGDVVQMAGLKGENGLPGPSGPPGADGPPGPPGPPGPPGEPGIPGEIGQRGKKGEG
GLPGVDGLPGPPGPAGPPGPPGSPGQTGLPGLPGEIGFPGKHGEAGKPGLPGKDGIDGQP
GNDGEKGPRGEPGLDGFPGKPGPKGDEGSPGPRGPPGDRGERGLLGEAGVMGPRGERGVQ
GERGKDGDVGPKGEKGDKGEVGPRGLPGAPGDVASVIPEPGEPGKPGEKGEKGEQGKQGE
VGPRGLPGEQGFRGQPGPAGAKGDAGSKGDPGTNGEPGPPGLPGPQGQRGLPGNVGIPGS
IGPPGIAGQKGEKGDPGKEGHAGPPGLPGEPGLRGEAGPPGKGKDGAKGDAGPTGMPGAP
GLKGPPGNPGMQGMPGARGPPGEGTTGPAGPPGPPGPLGAVGPRGAPGIPGPQGPSGHNG
LPGRPGEKGAQGEPGKAADLSELDLKGVCSDCPPGPAGPPGMPGIPGEQGLAGPAGKNGQ
DGYQGPPGPVGPPGPPGAEGSKGVKGDRGSPGDAGDKGEKGPPGPPGYPGAAGTIGQPGN
DGNPGPPGPPGPPGEKGKEGLKGIQGPPGLPGLMGVMGKPGKDGRPGEVGEPGKQGEPGP
PGRDGLRGLPGFKGHRGEPGEPGSKGEEGKQGPPGRDGPPGKDGIMGPPGPEGHRGPSGQ
PGKPGEPGPPGKSGPSGTPGLPGGKGETGNPGMPGFTGPKGPSGPPGPIGPEGKQGIPGK
QGERGFKGEKGDNGIKGDKGPTGEPGMPGTPGVPGRKGHTGMMGMSGPPGEMGPSGPPGS
PGQPGLPGQRGETPSLESIRRLIQEELAKELQAKMAYLMAQIQPTHIKSSVGRPGPPGPP
GKEGQPGRPGPPGEPGMPGQNGAEGPRGPAGPKGERGARGEKGENGVGQRGEPGPTGPIG
PAGIPGDGKDGLPGATGAQGEPGHPGPHGQPGPPGPPGQCDPSQCAYYASLASRPHTKNV
KGT
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcacgattttggtgcaggatctcactgatcctgaccattctggccttgaccttg
tacagtgaaggggtcaagggtcagagggctggttgtaagaatgtccactatgacctggtg
ttcatcctcgacacctcgtccagtgttggaaaggacaactttgagaagatccgacagtgg
gttgccaacctggtggagtcgtttgacattggtgaggataagactcgtgtggcagtggtg
cgatacagtgaccgtcccaccaccgagttcaacttgggccggtacaaaaccctcgacgag
gtcaaaagggcagccaggaacatccgctacctgggtggcaacaccaaaactggagacgct
atcagctacaccaccaccaacatcttcaacatccaggcaggagccagacccgctgccagg
ggcatccagaaagtggccattttactaacagacggtcggagtcaggattacgttctggag
ccgtccactgcagcggccagggctgggatcaggatgtttgctgtggggattggcgaggcg
ctgaaagaggagttggaggagattgcggccgagccaaaaaacgctcacgtcttccacgtg
acagatttcgatgccattgacagaatccgaggcaggctgaggaggagactctgtgaaaat
gtgctgtgcccaaacatgaaggtacaaggggaacgcttcaagcccaacagcacgagcgcc
ggactacaggaagttccaggcttcgacctgatggagtactttaatgtgagagatgttctg
ggagagaagtctgaacctggacagagctcctatgtgagactggggactatgcctatcgtg
cagcagactgaaaacgtgtttccccaaggccttccagatgaatacgccttcgtcaccacg
ttcaaattcagaaagacatctaggagggaggactggtacctgtggcaggtctatgacaag
tacggcatccctcaggtttctatccgtctggatggagagaataaagcagtggaatacaac
gccgtgggtctgaccaaagacgcagtccgagccgtgttccgcagcccagatgtggaaaac
ctgttcgacagaaactggcacaagattggcctgagcgtccacgccaaatccgtctcgctc
tatctggactgcaaacacatccagaccctaccgatcgaggagcgagaggacatcgatatc
cagggcaaaaccgtcatcggcaagagactctacgacagcgtccccatcgacttcgacctt
cagaggatggtaatctactgcgactccaagcaggcagagcaggagacgtgctgtgacctg
cctggaggcccttgccataagcaggtggtcactgaacccacccctattttaatcccgacc
ccgactcctacgagtggagagcagaagagtggagaacacaccgtcaactgttcctgcgcc
gcaggggagaggggtgagacaggtctgcctggtgctcaaggccctaagggtgaaaaggga
gatccgggccttcagggtacggcaggaccgcaaggacccaaagggcagaaaggagaacct
ggcaaggcgctctctatcaaaggagatagaggcgagaagggagacagcggagatccaggt
gagactggggtcagaggtgacaagggtgagaggggattggaaggcctcccgggactcgct
ggcaaacagggagacaaaggagagcagggtgtgaagggatctgctggagctcctgggtta
cctggaccactcggaccacagggtgtccaaggtgacaggggacactctggagcgcctggt
cccaaaggtgtttctggcgatccaggtaaaaagggagaaaagggaacagcaggagagagg
ggtctcccagggttagatggttttcctggcaaacctggagctccaggaaaagacggtctg
acgggtctgattggtgcacctggaccacacgggtttaaaggagaaaagggtgagagaggt
cctgctggaatacctggagatgtggtgcaaatggcaggactgaagggagaaaatggcctt
ccaggaccatccgggcctcctggagcagacggacctcctggacctcctggtccacctggt
ccacctggagagccgggaatcccgggagaaatcggacaaaggggaaagaaaggagaagga
ggacttcctggagttgatggtcttcctggaccaccgggtcctgcaggcccccctggacct
cctgggagtccgggtcagactggacttcctggattaccgggagaaatcggattccctgga
aaacacggagaggctgggaaacctggtctgccagggaaggacggcatcgatggtcaacct
ggaaatgacggagagaaaggaccaagaggtgaaccggggctggatggcttccctggaaaa
cctggtccaaagggtgatgaaggatctccaggacccagaggacctccaggagacaggggt
gagaggggtctccttggtgaagctggtgtaatgggaccgagaggagaaagaggagtgcag
ggagaaagaggaaaagacggtgatgtcggcccaaaaggagagaaaggagacaagggtgaa
gttggacccagaggacttccaggagccccaggagatgttgccagtgtgattcctgagcct
ggagaaccagggaaacctggagagaaaggagagaaaggagagcagggaaaacaaggagag
gtgggtccgagaggacttcctggagaacaaggcttcagaggacaacctggacctgcggga
gctaaaggagacgctgggtccaaaggagatccaggcactaacggagaaccgggtcctccc
gggctgcccggccctcaggggcaacgaggactacccggcaacgtgggaatcccgggcagt
atcggaccaccggggatagcaggacagaagggagaaaagggagaccctggtaaagagggt
catgcaggcccccctggtctgcccggagagcctggtctaagaggtgaagcaggaccacca
gggaaaggcaaagatggagcgaagggggatgcaggaccaacaggaatgcctggagctcca
ggactgaagggcccaccaggaaatccaggaatgcaggggatgccaggagccagaggtcct
ccaggagagggaaccaccggaccagcaggaccaccaggcccccctggaccattaggagca
gtggggccgagaggagcaccgggtataccgggacctcaaggaccttctggacacaacggt
ttaccaggaagacctggagagaaaggagctcagggagaaccgggtaaagctgcagacctg
tctgagttagacctgaagggtgtttgttctgactgtccacctggacctgctggaccacca
ggaatgccaggaattccaggagaacaaggccttgctggaccggcagggaaaaacggacag
gatgggtatcagggtcctcctggacctgtcggacccccaggaccacctggagctgaggga
agcaagggtgtgaaaggtgaccgaggctccccaggagatgctggagataaaggtgaaaag
ggacccccagggcctcctggttatccaggtgcagctggaacaataggtcaacctggaaat
gatggcaacccgggaccccctggtcctcctggacctcctggagaaaagggtaaagaggga
ttgaaaggaatccagggtcctccaggtctgccaggcttaatgggagtcatgggtaagcct
gggaaagatggacgaccaggagaagtgggcgagccgggtaaacagggagaacctggacca
ccaggaagagatggactcagaggtcttcctggttttaaaggtcacagaggagagcctggg
gaaccagggtcaaagggtgaagaagggaaacagggtccaccaggacgggacggtccacct
ggaaaagacggcatcatgggacctcctgggcctgaaggtcacagaggaccaagtggacaa
ccaggtaaacctggagaacctggaccaccggggaaatcaggaccatccggaactccaggt
cttccaggagggaagggggagacgggaaacccaggaatgcccggattcacaggtccaaaa
ggaccgtcgggtccacctggtcccatcggccccgagggcaaacaaggcataccaggcaaa
cagggagaaagaggcttcaagggagagaagggtgacaatggcataaaaggtgacaaaggc
cccacgggagagccaggaatgcctggaaccccaggagttccaggcagaaagggtcacaca
ggcatgatggggatgtctggacctcccggagagatgggaccctctggacccccaggatct
cctggccagcctggtcttccaggacaaaggggagaaactccatctctggaatcgatacgc
aggttaattcaagaggaacttgccaaagaactacaagccaaaatggcctacctcatggct
cagattcagcccacacacataaagagctcagtcgggcgtcctggtccacctggacctcca
ggaaaagagggacaacctggacgaccaggtccacctggagagcctggtatgcctggccaa
aacggagcagagggaccccgaggtccagcaggtcctaaaggtgaaagaggtgctagaggg
gagaagggagaaaatggtgttggacagagaggagaacctggtccaactggtcccattggt
ccagccggaattcctggagacggtaaagacggtcttccaggagcaactggagctcagggc
gagcctggacatccaggtcctcatggacaacctggcccaccgggacctccggggcaatgt
gacccctctcagtgtgcctactacgccagcctggcatcacgacctcacactaaaaacgtc
aagggaacctaa
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integrated database retrieval system
