Pangasianodon hypophthalmus (striped catfish): 113524018
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Entry
113524018 CDS
T05759
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113524018 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113524018 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113524018 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113524018 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113524018 (col4a2)
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113524018 (col4a2)
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113524018 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113524018
NCBI-ProteinID:
XP_026765933
LinkDB
All DBs
Position
Unknown
AA seq
1672 aa
AA seq
DB search
MKCKLRMEGVMQPQHRGLVNILRVLLICLVVLVLTSEVHAGGKKHSGICGGRDCSGGCKC
YPEKGARGQPGPLGPQGPTGPPGRAGDPGLQGFKGEKGNPGEPGVTGLKGAQGMIGSPGF
PGADGIPGHPGQQGPRGKPGADGCNGTRGDTGTPGLEGFNGPAGENGQPGKKGEKGDSLD
ISVYMERFRGEPGLPGHPGPIGPPGSSGLQGRPGLIGAQGEKGNRGPPGPKGSATATHKG
EKGEQGGVGDPGPPGTEELKGPFPGPKGEKGFKGEPGDLGFHIKGETGVPGFPGERGSTG
RTGLKGKKGEVGDEGYPGQPGSKGEPGEAGELIYSNGYSGVGPPGPPGERGPPGTDGLRG
NKGLQGPSGQDAQELLELFGPFGPKGEKGKKGDAGEPGIPASEPGPPGFDGLPGPPGPAG
PKGSWSVFFRGPEGPPGRPGNAGAKGRKGDHGHCECTLRTSPPGPPGPVGDQGDPGIAGE
WGQRGDQGDQGPRGLTGLHGFPGTQGLAGPKGSKGDRIEVKEKGSPGEPGDPGRPGEQGN
QGRPGTIGIDGAPGLHGLPGEGPVGEPGEKGYPGRPGPPGFPGLEGLPGQPIGAPKGVKG
IPGDAGLNGYDGLPGLPGTSGDCSLQGEGGKWITAGDCAAISGTPGDIGPPGLLGLEGMP
GLPGPKGFAGDRGKIGAKGVQGDQGIGGQTGKPGFTGPRGDIGNTGPKGLKGSSGIPGRP
GLDGDPGQKGPNGEALGASPGPPGEGGLPGQQGLKGPPGNPGKIGYPGMEGMPGMIGIKG
ESGPPGLQGETGTPGPAGKFGFPGKPGQTGPPGPPGHTGPPGPKGKTGDRGDGGPPGPTG
VKGVRGQPGSDAGPGDYGTQGDPGDPGHIGQPGVPGLKGVKGSSGMTGFPGMFGNPGLKG
LQGQKGLVGIPGEQGEKGGMGQQGQKGERGVMGPPGKMSIIEMTHMKEVMKGTKGDHGYE
GDAGFTGPRGTKGLPGIPGQEGHHGLPGDPSNTKGLQGQPGAQGLPGQKGMPGPTGSPGI
HGFYGQSGPRGEKGSPGAYGATGYVGIKGIKGDHGDIIDLPGPTGPRGESGLPGPLGQKG
HTGESGDRGSPGFDGIEGNKGTQGEPGRPGHSGAEGLQGFPGNQGSKGWPGVPGAAGAPG
KPGHPGQTGFPGLDGISGLHGLKGPKGLPGVAGLDNWGIPGEDGEKGQIGDAGVPNTEIG
VPGAHGLKGSTGDPGVQGDPGPPGNQGSPGAQGIPGRKGLSGDIGFPGQKGLPGLPGTTG
LPGFPSPFGAKGDHGIQGGHGTSGPKGPPGDIGDKGFSGQSGVSGGKGIKGAMGRMGVPG
PRGLQGGRGLPGSKGETGPPGPPGPPGAKGLPPVPVKVPGERGPPGSLGNQGLQGVRGEL
GPMGHPGDQGFVGPQGQKGMPGLPGIPGTPGVRGDVGPMGHQGLQGLEGNRGRPGIPGPT
GMPGRSVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLP
RFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPIPMMPVEESEIKPYISRCSVCEAPSVA
IAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECN
GAKGTCHYFSNKHSFWLTSIDQSFHSSPESETLKAGQLLSRISRCQVCMKNL
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtaaattgcggatggagggagtgatgcagccacagcaccggggactagtgaac
atcctgagggttcttttgatttgtctcgtcgtcctcgtcctgacgtcagaagttcacgca
ggtggtaagaagcacagtggaatatgtgggggcagagactgcagtggcggttgtaaatgc
tatcctgagaaaggtgcaaggggccagccaggtcctcttggccctcagggccctacggga
cctccaggacgtgcaggtgaccctggcctgcaaggttttaagggagagaagggtaaccca
ggtgagccaggcgtcacaggactgaaaggggctcagggaatgataggaagtccagggttt
ccaggagcagatggtattccaggtcacccagggcaacaaggccctcgaggaaaacctggt
gctgatggctgtaatggaacccggggagatactggaacacctggcctggagggatttaat
ggtcctgctggagaaaatggtcagcctggcaagaagggtgagaaaggggactccctggat
attagcgtttacatggagagatttcggggtgagccaggacttccaggacatccaggacct
ataggccctcctggaagcagtgggcttcaaggaagaccaggtctcataggtgctcagggt
gaaaagggtaatagaggacctccaggaccaaagggcagtgcaactgcaacccataaagga
gaaaaaggagaacaggggggtgttggagatccagggccgccagggacggaagagttaaaa
ggcccctttccaggccccaaaggcgagaaaggttttaaaggtgaaccaggagatttgggg
tttcatatcaaaggagagacaggagttccaggatttcctggggaacggggctctacagga
agaactggactgaaaggaaaaaagggtgaagttggagatgaaggttatcctgggcagcca
ggaagcaagggggaaccaggagaggcaggagagctgatctattcaaatggatatagtgga
gttggcccaccaggtcctccaggagaacgtgggccaccagggactgatggtctcagagga
aataaaggattacagggtccctctgggcaagatgctcaggaactattagagttattcggc
ccatttggaccaaaaggggaaaaggggaagaaaggtgacgctggggaacctggtatccca
gcctcagagcctgggcccccaggctttgatggcctaccaggaccacctgggccagccgga
ccaaagggatcatggagtgtgtttttcagagggcctgaagggccacctggtcgtccagga
aatgctggagcaaaaggacgtaaaggtgaccatggtcattgtgagtgcactttgcgaacc
tcccctcctggaccccctggcccagttggcgatcagggtgaccctggaatagcgggcgag
tggggtcagcggggtgatcagggagaccagggtcccagaggcctcactggtctgcatggc
tttcctgggacacaggggctggccggacctaaaggctctaagggagatagaatagaggtt
aaagagaaaggatcacctggagaaccaggagacccggggagaccaggtgaacaaggaaat
caaggcagacctgggactattggaatagatggtgcccctggacttcatggtcttcctgga
gaagggccagttggtgagcctggagagaagggttacccaggcaggccaggtccaccaggg
ttcccaggactagaagggttaccaggacaaccaattggagcacctaagggtgttaagggt
atacctggtgatgcaggattaaatggttatgatggactcccaggcctaccgggtacttca
ggagactgtagtctacaaggagaaggaggcaagtggattacagcaggggattgtgcagct
atatctggaaccccaggagatataggacccccaggacttcttggattggagggaatgcca
ggtctacctggtccaaaaggatttgcaggagatagaggcaagataggagctaaaggagtt
caaggagaccagggcattggaggccaaactgggaaaccaggttttactggacctcgtgga
gatataggcaatactggaccaaaaggtctcaaaggttcttctggcataccaggtaggcca
gggcttgatggtgatcctggacaaaagggtcctaatggtgaagctctaggagcatctcct
gggcccccaggtgaaggaggactaccaggacagcaggggctaaaaggtccccctggaaat
cctggcaaaattggatacccaggcatggagggaatgcctgggatgattgggatcaaaggt
gaatcaggtcccccaggcttgcagggggaaacaggaacacctggaccagcaggaaaattt
ggcttccctgggaagcctggtcagacaggaccccctggacctccaggccacactggacca
ccagggcctaagggaaaaacaggcgatcgaggagatggcggtcccccagggcccacagga
gtgaagggtgttaggggacaacctggaagtgatgctgggccaggagattatggaacacaa
ggggatccaggtgaccctggacatattgggcagcctggcgttcctggccttaaaggtgta
aaaggctcttcaggcatgacaggtttcccaggaatgttcggaaatcccggtctaaagggc
cttcaaggacagaaagggctggtaggaataccaggggaacaaggagagaaaggaggcatg
gggcaacagggacaaaaaggtgaaagaggagttatgggccctccaggtaaaatgtccatc
atagaaatgacacatatgaaagaggttatgaagggtacaaaaggtgaccatggatatgaa
ggagatgcaggtttcactgggccccgaggcaccaaaggtttgccagggattccaggacaa
gaggggcatcatggattacccggggaccccagcaatacaaaaggtctgcaaggacagcct
ggagctcagggacttcctggccagaaagggatgccaggtcctacaggatccccaggaatt
cacggattttatggacagagtggacctaggggggagaaaggttcccctggtgcttatgga
gcaacaggatatgttggaatcaaggggatcaaaggtgaccacggtgacattatcgatctc
ccaggacccacaggacccagaggggaaagtgggctgcctggacctttaggtcagaaaggt
cacacaggtgagtcaggagatagaggaagtcctggttttgatggcatcgaaggaaataaa
gggactcaaggtgaacctggaagaccagggcattcaggtgctgaaggtctacagggcttt
ccaggaaaccagggttctaagggctggccaggagtgccaggagcggcaggggcccccggt
aaaccaggtcatccaggacaaacaggttttcctggccttgatgggatttcagggttgcat
ggccttaaaggtccaaaaggccttccaggtgttgcaggtcttgacaattgggggatacca
ggtgaggatggagaaaaaggacaaatcggagatgcaggtgttcccaacacagagattggg
gttcctggagctcatggccttaaaggttcaacaggagatccaggtgttcagggtgatcca
ggccctccaggaaatcaagggtctccaggagcacagggaattcctggcagaaagggtcta
tcaggggacatagggttccctggtcagaaaggtcttccaggccttcctggaaccactggt
cttccaggttttccatctccatttggagctaaaggagatcatggcattcaaggaggtcat
ggaacctcaggaccaaaagggccaccaggggatataggagacaaaggattttctggacag
tctggtgtgtcaggaggaaaaggtataaagggagccatgggaaggatgggtgtcccagga
ccacgtggtttacaaggtggtagagggcttcctggatctaaaggagagactggaccacca
ggcccacctggcccccctggtgctaaaggactccctccagtacctgtgaaggtgccagga
gagagaggaccccctggttcacttggaaatcaaggactacaaggagtgagaggagagtta
ggccctatgggacaccctggagatcaagggtttgtgggaccacaggggcaaaagggaatg
ccagggctgcctggaataccaggaacaccaggtgtccgtggggatgttggaccaatggga
caccagggcctccagggcctagaaggaaaccgtggccgtcctggtattcctggtcccact
ggtatgcctggacgcagtgtcagtgttgggtacctcctggtgaaacacagtcagtctgat
cagacgccaatgtgccctgtgggaatgtccaagctgtgggatggctacagcttgctttac
tttgaagggcaggagaaagctcataatcaggaccttggtctggcaggctcttgtcttcct
cgtttcaacaccatgccattcctgtattgcaaccctggtgacatatgctactatgctagt
cggaacgacaagtcttattggctttctacaactgcccccattcccatgatgcctgtggaa
gagtcagaaataaagccttatatcagccgctgttcagtatgtgaggctccatctgtggct
atagctgtgcacagtcaggatataactatcccacaatgccctgcaggctggagaagctta
tggattggctactctttcctcatgcatacagcagctggagatgaaggaggtggtcagtct
ctggtgtctccaggctcgtgtctggaggatttccgcaccactcccttcattgagtgtaat
ggagctaagggtacctgtcactacttctctaacaagcacagcttctggctgacatccatt
gaccagtccttccacagttcccctgagtctgagactctcaaggcgggacagctcctctca
cgcatcagtcgctgccaagtctgcatgaagaacctgtga
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integrated database retrieval system
