KEGG   Pangasianodon hypophthalmus (striped catfish): 113524036
Entry
113524036         CDS       T05759                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04382  Cornified envelope formation
phyp04510  Focal adhesion
phyp04512  ECM-receptor interaction
phyp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    113524036 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    113524036 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    113524036 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    113524036 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:phyp04147]
    113524036 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:phyp00536]
    113524036 (col4a1)
Exosome [BR:phyp04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   113524036 (col4a1)
Glycosaminoglycan binding proteins [BR:phyp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   113524036 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 113524036
NCBI-ProteinID: XP_026765954
LinkDB
Position
Unknown
AA seq 1637 aa
MRVLSGSLLLVAAVLFSADPSRAEGCSGSSCGKCDCSGVKGSKGERGLPGLQGNMGFPGM
QGHEGPQGPTGPKGDHGEPGAHGMKGIRGPPGLPGIPGIPGHPGIPGQDGPQGLPGIPGC
NGTKGDRGRDGIPGIPGLPGPPGFPGDPGVKGDPGGVIGGFIPQKGERGFSGAPGSPGPP
GHAGPHGPVGPPGPEGPRGYTGEPGPPGPPGDKLTFVGPKGEKGEKGLTGPPGPPGIPRE
VEGSITVSIPGEKGEKGAPGQKGDMCSPYQAGIKGEPGPPGPQGKIGKDGNNGAKGEKGE
LGMPGFSGLKGQKGEKGPPGYADGAPGPPGPPGLPGPMGERGLPGYTGEPGLPGKNIVGP
PGHPGFPGEIGQKGDKGADGESLRGPKGTDGPPGQPGPPGPLNEECDVDRGEPGPPGPPG
LQGEVGQKGDRGDTCTQCSASGPPGLPGIQGPKGNQGFHGQPGSKGEKGQPGTQGAPGFP
GNDGSPGLIGAPGAKGEPGDIYITPELKGEKGSPGVPGSRGLPGIDGLPGKDGWPGLPGP
KGEPARVGIKGDRGLDGEPGKIGPTGERGPPGPSGIGRPGEPGEKGSQGFPGAPGRPGTP
GPKGEPGKGVSSPGPPGPPGPRGETGLPGLQGERGFPGDQGRAGLPGEKGDPGLPGIGFT
GPPGPKGHAGLPGAPGFHGDPGNPGQDGSPGHPGTPGQKGEPGIGLRGPKGSMGPPGVQG
FQGEKGNVGMPGVPGTEGRTGPPGPQGVKGETGPPGFPGFSGPPGPPGPGEPGLPGLMGP
PGEPGPLGRIGEKGEKGPQGVPGPPMPGPQGEKGTPGFPGSPGPKGFPGEPGSPGIDGIP
GERGPKGDIGVMGIPGSPGQQGQPGAPGTIGPRGDPGVSGPRGEFGEQGPKGERGDPGLQ
GPPGNMTDVEMEHMKGEKGDIGDRGDPGPTGEKGIPGSPGDPGIPGKDGMPGSPGKPGEK
GDPGLPGKPGPDGQPGVKGSIGEMGLPGSSGPKGSKGVAGQPGHHGFKGDPGIKGEKGEV
GLPGIGIPGLPGEKGEMGQPGFPGESGQKGVKGSMGIPGTPGTAGPKGDIGPIGYPGSPG
VPGEKGAIGLPGLPGQPGLEGRSGEPGLQGPQGSQGKKGEPGTDGVPGAAGERGEPGLPG
RGFPGTPGQAGEKGEKGNPGPPGMPGSPGVPGTKGEKGLPGYQGIQGRPGERGLPGLSME
GTKGEKGAQGEPGEPGQTGAPGPSGVPGSPGAKGEKGEKGFQGIQGPHGLKGDKGFTGQP
GEPGLPGYQGLKGEMGAPGLPGFQGLKGENGLTGFKGEIGDRGFPGAKGNDGPPGPPGPS
IFIKGDIGLQGPQGPQGLPGPQGNPGPKGQQGLIGIQGIKGEDGVPGYNGFPGAKGEPGH
TGPSGSRGYPGPPGPDGIPGQVGPPGPSSMDHGFLVTRHSQSIEVPLCPQGTTLIYDGYS
LLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMS
MAPITGESIKPFISRCAVCEAPAMVIAVHSQTVAIPPCPHGWISLWIGYSFVMHTSAGAE
GSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFSKPVPTTLKA
GNLRTHISRCQVCMKRT
NT seq 4914 nt   +upstreamnt  +downstreamnt
atgcgcgtgctcagcggctcgctgctgctcgtagcagccgtgttgttcagcgcagatccg
agcagagcagaggggtgttcaggctcatcatgtgggaagtgtgactgcagcggtgtaaaa
gggtcaaagggtgagagaggtttacctggtttacaaggcaatatgggatttcctggtatg
caaggtcatgagggcccgcaagggccaacaggaccaaagggagatcatggtgagccaggg
gctcatggaatgaaaggaatacgtggtcctcctggtttacctggtattccgggaattcct
gggcacccgggcatcccaggtcaagatggcccacagggactgccgggcatccctggctgc
aatggaacaaagggggatcgaggcagagatggaatcccaggcataccaggattgccggga
ccaccaggttttccaggtgatccaggagtgaagggtgacccaggcggtgttattggtggg
tttattcctcagaaaggagagagaggcttttcaggagcaccaggatcgccagggccacca
ggacatgctggaccacatggaccagttggcccaccaggaccagaagggcctcgaggatat
actggtgaacccggccctcctggccctcctggtgataagcttacttttgttggtccgaaa
ggtgaaaagggtgaaaaaggcctcacaggtccaccagggccccctggaattcccagagaa
gttgaaggaagcatcacggtttctatccctggagaaaaaggtgaaaagggggcgcccgga
caaaagggtgacatgtgttcaccatatcaagcaggaatcaaaggtgaaccaggacctcca
ggcccacaaggaaaaataggaaaggatggaaacaatggagctaagggggaaaaaggtgaa
cttggtatgcctggattttctggcttaaaggggcaaaaaggagagaaaggacctccagga
tatgctgatggtgcgcccggccctcctggtcctccaggcttacctggaccaatgggagag
agaggcctccctgggtatactggagagcctggtcttccaggcaagaatattgtgggtcct
cctggacatccaggctttcctggagagattggacagaaaggagacaaaggtgctgatgga
gagtctctcagaggacccaagggaactgatggacctcctggtcaacctggacccccaggg
ccattaaatgaggagtgtgacgttgatcgtggagaaccaggtcctcctggacctcctggg
ttgcaaggagaagtgggacagaaaggtgacagaggagacacttgcacacagtgctctgcc
agtggacctccaggtttacctggtattcaggggccaaaaggaaatcaaggtttccatgga
caaccaggtagtaaaggagaaaaaggtcagcctggcactcaaggagctcctgggtttccg
gggaacgacggctccccaggtttgattggtgctcctggggcaaagggtgaaccaggtgac
atctatataaccccagagctgaagggagagaagggctcacctggggttcctggcagtagg
ggattaccaggcatagatggattacctgggaaagatggatggccaggtctaccaggaccg
aaaggagagccagctagagtcggtattaaaggtgaccgtggcctggatggcgagccaggg
aagataggacccactggtgagagaggacccccaggtccttctggaatcggccgccctgga
gagcctggagaaaagggcagtcaaggatttcccggtgctccaggaaggccaggaacgcca
ggacctaaaggtgaacctggaaaaggtgtaagttcaccaggacctccaggtccaccagga
ccacgtggtgagacaggattgcctggccttcaaggtgaaaggggttttcctggagatcaa
ggacgggcaggattaccaggtgaaaaaggtgaccctggccttccaggaatcggatttaca
ggtccaccaggtccaaaaggtcatgccggtttaccaggtgcaccaggattccatggagac
cctggcaatccaggtcaggacggttctcctggacacccaggaactcctggacaaaaaggt
gaacctggcattggcctccgaggacccaagggctctatgggtccgccaggagttcaaggg
tttcaaggtgaaaagggtaatgtaggaatgccaggagtccctggaaccgaaggacgaact
ggaccacctggtcctcagggtgtaaaaggtgaaactggccctcctggattcccaggtttc
tcaggaccacctggacccccaggacccggtgagcctggactacctggactgatgggaccc
cctggagaacctggtcccttaggtcgtattggtgaaaagggagagaaaggtccccaaggt
gtacctggtcctccaatgcctggtcctcaaggtgagaaaggcacccctggttttcctgga
tcaccagggcctaagggctttccaggggaaccaggaagtccaggtatagacggaatccct
ggagagagaggtcccaaaggagacatcggagtaatgggaattccagggtcacctggacaa
cagggtcaaccaggagcccctggaaccattggaccaagaggtgaccctggtgttagtggg
cctaggggagagtttggtgaacagggccctaaaggagagagaggagatcctggtcttcaa
ggaccacctggtaatatgactgatgtggaaatggagcatatgaaaggagagaagggagac
atcggagacagaggggatccaggccctacaggagagaaagggatccctggatcacctgga
gatcctggaatacctggaaaggacggaatgcctggttcaccaggaaagccaggtgagaaa
ggtgatccaggacttcctggaaaaccaggaccagatggacagcctggagtaaaaggcagc
ataggagaaatgggattgccaggatcatctgggccaaaaggcagtaaaggtgttgctggg
cagcctggccatcacgggtttaagggtgatccaggaatcaaaggtgaaaagggagaagta
ggtctgccaggaataggaattcctggcctccctggtgagaagggtgaaatgggccaacct
ggttttcctggggagtctggacaaaagggagtgaaaggttccatgggaatcccaggcaca
cctggaacagcagggccaaaaggagacataggcccaattggttacccaggtagccctggg
gtaccaggtgaaaaaggagccattgggttacctggattaccagggcagcctggtcttgaa
ggacggtcaggtgaacctggtctgcagggtccccaagggtcacaagggaagaaaggagag
ccaggaacagatggagtccctggagctgctggggagaggggtgaaccaggcttacctggt
agaggctttcctggaacccctgggcaggcaggcgaaaaaggggaaaaaggtaacccaggt
ccccctggcatgcctggaagccctggtgttcctggaaccaaaggagagaaaggcctgcca
ggataccaaggtattcagggtcgacctggtgaaagaggactaccagggctatcaatggag
gggactaaaggggagaaaggagctcagggagagcctggagagccagggcagactggtgct
ccaggtccatcaggtgttccaggtagtcctggagctaaaggagagaaaggagaaaaaggt
ttccaaggcatacagggtcctcatggtttgaaaggagataaaggtttcactggccaacct
ggtgaacctggcttaccaggctatcaaggactaaagggtgaaatgggagctccgggcctt
cctggcttccaaggattaaagggtgagaatggattgactggtttcaaaggagagattggt
gatagaggatttccaggggctaaaggtaatgatggccctcctggacctccaggacccagt
atctttataaaaggagacattggtttgcaaggaccacagggtccccaaggtttaccaggg
cctcaagggaatcctggaccaaaaggacagcaaggattgattggtatacagggtattaaa
ggagaggatggggtaccaggatacaatgggtttccgggcgctaaaggagaacctgggcat
actggaccctctggatccagaggatatccaggccccccgggtcctgatggtatcccaggt
caggttggccctcctggaccctcttccatggaccatggcttcctagtgactcggcacagt
cagtccatcgaagtgcccctgtgtccacaaggcaccactctgatctatgatgggtactcc
ctcctgtacgtccagggaaatgagcgatcccatggccaagacctgggtacggccggtagc
tgcttgaggaaattcagccccatgccattcctcttctgcaacatcaacaatgtgtgtaac
tttgcttctcgtaatgactattcctactggctcacatctcctgagcccatgcctatgagt
atggctcctatcactggcgagagcataaaacctttcatcagcagatgtgcagtgtgtgag
gctcctgccatggtgattgctgtgcacagtcagactgtagccatcccaccctgccctcac
ggctggatatctctgtggattggttattcctttgtcatgcacaccagtgcaggtgctgag
ggctctggtcaggctctggcctctcctggctcctgtctggaggagttccgctctgctccc
ttcattgagtgtcatggccgtggcacctgcaactactatgctaactcctacagcttctgg
ttggccaccatcgaggataatgagatgtttagcaaacctgtccccaccacactaaaggct
gggaatctgcgaactcacatcagtaggtgtcaagtgtgcatgaagaggacttag

DBGET integrated database retrieval system