Pangasianodon hypophthalmus (striped catfish): 113524215
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Entry
113524215 CDS
T05759
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113524215 (zc3h12b)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
113524215 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
UBA_N4BP1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
113524215
NCBI-ProteinID:
XP_026766172
LinkDB
All DBs
Position
Unknown
AA seq
854 aa
AA seq
DB search
MEDEEGEEEGSSSESEGERRSAGRGHGGGGGGKGRKSELMMATKPHRQLCRSPCLDRPSF
SQSSTLQELRADDSPATPTSSSLAPPTPSVGHAPSDRDYQSKMEFALKLGYSGDQVEAVL
SKLGPSALTNDVLAELVRLGNKGEIEAQTQTQTSTGLMPAGLTLTPRGTGAKEAVSPEAS
LEEETNDTYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFLERGHKDITVFVPAWR
KEQSRPDAPITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSN
DNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKK
QPCPYGKKCTYGHKCKYYHPERAAQPIRSVADELRAFAKLSAVKTMSEGALAKCGISGAT
AKGDCSEVKRVAPKRQSDPSIRSVGCEQEERLCPARKAEASSVPSLVTALSVPTMPPTKS
HAAGALNTRSASSPVPGSLHFTHSSLEHAGSIQYPPILVTNSQGASVAYSEPFPKYDSVV
SDHGYYSMLSDFSTMSLGSMQDSFCSLEQPDPVGVGGGYPGRASSICPESGRSHSSDSFS
SYGGEMYSMEGSLDDGMKVPPSAQSQVQSQAQSRLQAFAHGFHHEALTRVQSYGTDEPKP
GPRKQSSAHLVPHAQHPVVGARSSCPGDYPPLPQNVLPSSGPTQPGRSLGMTRMDSISDS
RLYESNPLRQRRPPLCREQHASWDPLPCGSEPYGYGGYGLTGGLMPCCERVMVRSMPEKM
EQIWRSPWDTPPGPHGPVEPQERHPIPEHQYQTYRNLCNIFPAYVVHSVMEKNPHMTDPQ
QLAAVIVTKLRSCH
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggaaggagaggaagaagggagtagctcggagagcgaaggagagagacgg
agtgcaggaagaggacacggaggaggaggaggaggaaaaggaaggaaatccgagctgatg
atggcgactaaacctcaccgccagctgtgtcgctctccgtgtctggaccgtccgagtttc
agccagagcagcacgctacaggaactgcgcgctgatgattctccggccactcccacttcc
tcatcactggcaccgcccactccctcagtgggccacgccccttcagatcgggactaccag
agcaaaatggagtttgcgctgaagctaggttactccggcgaccaagtggaggccgtgctg
agcaaactgggaccgagcgcgctcactaacgacgtcctggccgaactcgtgcgtctcggg
aataaaggagaaatcgaagcacaaacgcagacacaaacgtccaccggactaatgccagct
gggttaacgctaacccctcgcggcactggagcgaaagaggccgtgagtccggaggcgtca
ctggaggaggaaacaaacgacacgtacgataacctccgacccatcgttatagacggatcc
aacgtggccatgagccatggaaacaaagaggttttctcttgcctgggcatccagctggct
gttgactggttcctggagcgaggacacaaagacatcacagtgtttgtaccggcgtggagg
aaagagcagtcccgacccgatgcgcctataacagatcaggaaatcctgagaaagctggag
aaagagaaaatccttgtcttcactccttctcgtcgagtccagggacgacgtgtcgtctgt
tatgacgatcggtttattgttaaattggcgtgcgattcagatggcatcatcgtgtcaaac
gataactatcgagatctgcagaatgaaaagccagagtggaaaaagttcatcgaggaacgg
cttctcatgtacagttttgtcaatgataagtttatgccaccggatgacccgctaggccga
catggcccaagcctggaaaactttctccgcaagcgacctgtcgtcccggagcacaaaaag
caaccatgtccttatggtaagaagtgcacatatggtcacaaatgcaagtactaccacccg
gagagagcagcgcagcctatacgatctgttgcagacgaactccgagctttcgccaagctg
tctgccgtcaagaccatgagcgaaggtgctctggcaaaatgcggcatttctggtgccact
gcaaaaggggactgttctgaggtgaaacgagtggcgccgaaacgtcagtcggacccgagc
attcgttcagtgggctgcgagcaggaggagcgactctgcccggctcggaaagccgaagct
agttcggttccatctttagtgacggctcttagcgtcccgaccatgccaccgacaaaaagt
cacgcagccggggcattgaacactcgttccgctagtagcccagtaccagggtcacttcat
ttcacacacagctcgctagaacacgccggaagcatccaataccctccaattttggtcacc
aacagccagggtgcatccgtggcatacagtgaaccttttcccaaatacgattccgtagtt
agtgaccatggctactattcaatgctgagcgatttctccaccatgagcttaggaagcatg
caagacagcttctgtagcttagaacagccagatccggtcggagtcggaggaggatatcct
ggtcgagcttccagcatttgtcctgaatctggacgcagccactcttcagactcattctcc
tcctacggtggagagatgtactccatggaaggtagcttggatgacgggatgaaggttcca
ccatctgcgcaatcccaagtgcaatcccaagcacagtcccgcttgcaagcatttgctcat
gggttccaccatgaagctttgacgagagtccaaagttatggcacagatgaacccaaacca
gggccacgcaaacaatcctcggcccacctcgtgcctcacgcgcagcatccggtggttgga
gctcgatccagttgcccaggtgactatcctccacttccccagaacgtgttgccttcgtcc
ggccctactcagccaggcagatccttgggaatgacacgaatggacagcatttcagattcc
cgtctttatgaaagtaaccccctccggcagcgtcggccccctctgtgtcgagagcaacat
gccagctgggatcctttgccgtgtgggagtgagccttacgggtacggaggttacggattg
acgggaggactcatgccttgctgtgaacgagtgatggttcggagtatgccagaaaagatg
gaacagatttggaggtcaccgtgggatacgccaccaggacctcacggaccggtggaaccg
caagagcgacatccgatccctgaacatcagtaccagacttaccgaaacctctgcaatatc
ttcccagcatacgtagtccactcggtaatggaaaagaatcctcacatgacggatcctcag
cagctagcagcggttattgtaacgaaactacggtcctgtcattga
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