Pangasianodon hypophthalmus (striped catfish): 113524411
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Entry
113524411 CDS
T05759
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113524411 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113524411 (ndc1)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113524411 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
113524411
NCBI-ProteinID:
XP_026766432
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MFAFNQDCWFIRKVVRWRALASIAWSVLLLPPITSLLVFFIRFSLFHPTHWLSAEGLKEE
QYKYMRFKGSAWWLVKCSAVQSLYSVRNYVILYFLFGHIPRTWISNTLNLHVDSSVHTLD
SFGGLCDVSLFYQLWISGTFLLLTWYLTVLLFRIYVTEPYRFPVQSTFAEDAEECLPKVL
TEKNALVMKFLALQDLALLSQHSPSRRQEVFSLSQPGGHAHNWNAISKECVSLLSDLTQR
LIAHHDAVASNGRAKPPSERSDARSSSSSSSVTSGTEDLPQTPRCSALIRTPGSVFGSAV
RGVNSPLTAPFTPDPTAPFSSPALRPLLSPQVAPRSWLGSVQSPHVTRRNPKLWSTSTDS
QANGSPPPSPDPAPKPAGEQKPSFLSQWLQNRKEQVKGFVAKRVLVVYLFNKLPEASSQA
LFADSQAHIWALEGLSHLVAASFSEDKYGVVQTTLPSILSSMLSLQEAVDRHFKLPHASS
KPAKTSCSLGDSTYKTLRFALRAALKTAIYRISTTFREHLQ
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctttcaatcaggattgctggtttatacggaaggtggtgagatggagagctcta
gccagtattgcgtggtcagtgctgctgctgcctcccatcacctctctgctcgtcttcttc
atcaggttcagtctgtttcaccccacacactggctctcagcagaggggctgaaggaagag
caatataagtacatgcgctttaaaggctctgcgtggtggctggtgaagtgcagcgctgtt
cagtctttatactctgtcaggaattacgtcatcctctatttcctcttcggacacatcccc
aggacgtggatctccaacacactgaatctgcatgtagacagttccgtgcacactctggac
tcgtttggaggactgtgtgatgtgtcgttgttctatcagctgtggatcagtggaacgttc
ctgctgctcacctggtacctcaccgtgctgctcttcaggatctacgtcaccgagccgtac
aggtttccggttcagtcgacattcgctgaggacgcagaagagtgtctacctaaagtcctg
actgaaaagaacgccttggtcatgaagtttctcgcgctgcaggatttggcattactttcc
cagcattccccttcacgcagacaggaagtcttcagcctcagtcagccaggtggacacgct
cacaactggaacgctatcagtaaggagtgtgtgtcactgctgagtgatttaacacagcgt
ctcatcgctcatcacgacgccgtagcatctaacggcagagcgaaacctccgtctgagaga
agtgacgcaagatccagctcctcatcctcctcggtgacgtcagggacggaggatcttcct
cagactcctcgctgcagcgctctgatccggactcccggctcggtgttcggttccgcagtg
aggggcgtgaactcgcccctgaccgccccgttcacccccgacccgaccgcaccgttctct
agccccgccctcagacccctgctcagcccgcaggtcgccccgagatcctggttgggttcg
gtccagagtcctcacgtcactcggaggaaccccaaactgtggagcacgtccaccgactca
caggccaatgggagcccaccgccgtcgcctgatcccgcccccaaacctgcaggcgaacag
aaacccagcttcctgtcccagtggctccagaacaggaaggaacaggttaaaggtttcgtg
gcaaagcgtgtgctggttgtgtatttgtttaataagctgcctgaggcgtcgagtcaagcc
ctgtttgctgacagccaggcgcacatctgggctctggaaggattgtctcatctggtagct
gcttcgttctccgaggacaagtacggagtggtgcagactacattacccagcatcctcagc
agcatgctctctctgcaggaagctgtggaccgtcactttaagctccctcacgcctcgagc
aagccggcgaagacgtcgtgcagtttgggtgactcgacgtataaaaccctgcggttcgct
ctgagagcagctctgaaaaccgccatctacaggatcagcaccacgttcagagagcactta
cagtaa
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