Pangasianodon hypophthalmus (striped catfish): 113524430
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Entry
113524430 CDS
T05759
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
113524430
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phyp01009
]
113524430
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113524430
Protein phosphatases and associated proteins [BR:
phyp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113524430
Cell adhesion molecules [BR:
phyp04515
]
Cadherins
Protocadherins
113524430
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
113524430
NCBI-ProteinID:
XP_026766458
LinkDB
All DBs
Position
Unknown
AA seq
1205 aa
AA seq
DB search
MIRLTMPRSVMDSVMSSWASLFLVLLFFFVAPSLSSIMYHLREEQPPNTLVGSLASDQGL
PDSGHLYKLEVGAPYLRVDGKTGDIFTTEVPIDRETLKDCRNLFEGDPCFLEFEVSITDL
MKGSGPRLIEGRIEIQDENDNTPQFSSPILSISIPENTLVGALFAIPVATDKDTGSNGIA
DYSLTTGSDAVSLFSLQVAENADEKVPQLIVMGNLDREQRDSYDLNIKVVDGGNPPRYSS
ALLRITITDTNDNVPKFERSHYEGELAENSPVGHSVLQVKANDADVGDNGVVTYILYQAP
TIVQHLLSIDRNTGIIYVKGPVDREEVNLLKFYVQAKDNGPQAKSSKALVTITVKDKNDN
APSIRIRGFALVAHEDGIANISEDMPVGTPVALVEVTDRDEGENAVVTCVVAGDVPFQLR
SASDTSRRKYFLQTTTPLDYERVKEYRIEIVAVDSGNPALSSTNSLKVQVTDVNDNAPVF
SPSMYEVDFPEENQPGDKVLDVVATDADSGTNAELTYNIILDSAIKGLFEINRNTGEVRV
MDQLDREYRERYEFHVEASDKGVPSMRGTATVVVNVLDRNDNDPKFMLNGYSFSVLENMP
PLSPVGMVTVMDVDKGENAQVHLSVEPDNGKFVIQNGTGTILSRISFDREKESTYTFRLK
AVDGGDPPRSSYVGITINVLDENDNAPYITKPSNSSYKFLPPLTSPDTRVEKVEAEDIDT
GLNAELDYTIMGGNPHGLFRISPTDGEITLVKEFTRKHNGLHRLVVKVSDKGKPAKHTTA
LVHIFVNETIGNVTLVESLVGHSLYTPLERDIAGDPEYARVQQSNIVYGSLAGIAGVILV
IVVVVVIRHRLQKEAKSGYQAGKKESKDLYTPKQGTKSSKGKKGKKGKSPKPAKSLEEDE
EASLQKGLKFNLMSDNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKH
QAVQDLPAANTFVGTGDSNSTGSDQYSDYSYKTNPQKYSTKQLPHRRVTFSTANQAQDLQ
DSSQHSYYDSGLDESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEIEHPENDLRSL
PDVAMTGNCTRECSEFGHSDSCWMPSPNRSNKISKSASKLSTFVPYQEREPQETLMANGS
PKPMGEELGGGATNKMPSIRFMAPYTSAYSAAGEGAKECSMEEIPLSQTAATTPSSQGSK
REIYL
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgatcagattaacgatgccccgcagcgtgatggactcagtgatgtcgtcttgggcgtcc
ctcttcctcgtcctcctgttcttcttcgtcgctccctccctcagctccatcatgtatcac
ctgcgggaggagcagccgcccaacacgctcgtcggcagtttagcatcagatcagggactt
cctgattccggtcacctgtacaaactggaggtgggcgccccctacctgcgggtggacggg
aagacgggcgatattttcaccacagaggttcccatcgaccgcgagacgctaaaagactgt
cgcaacctgttcgagggcgacccgtgcttcctggagtttgaggtttccatcacagatctg
atgaaaggttctggcccgcggctcatcgaaggccggatcgagattcaagatgagaacgat
aacacgccacagttctcatcacccatcttgtccatatccattcctgaaaacacccttgtg
ggggcgctgttcgccatccccgtagccaccgataaggacacgggcagtaacggaatcgca
gattactcgctaacgacgggctccgacgcagtgtctctgttcagcctgcaggtggcggaa
aatgcggatgagaaagtgccgcagctgatcgtgatggggaatctggaccgtgaacagcgc
gactcgtacgatctcaacattaaagtggtggacggtgggaatcctccacgctacagcagc
gccctcctgaggatcaccatcaccgacaccaacgataacgtgcccaaattcgagcgctcg
cactacgaaggggagcttgctgaaaacagtcctgtgggtcactcggtcctgcaggtgaag
gccaacgatgctgatgtgggagataacggtgtggtcacgtacattctctatcaggcaccg
accatcgtgcagcacctcctcagcatcgacagaaacaccggcatcatctacgtcaaaggt
ccagtggaccgtgaagaagtgaatctgctcaaattctacgtccaggccaaagacaacggc
ccgcaggccaagagctccaaagccctggtgaccatcacagtgaaggacaagaatgacaac
gcaccttccatcaggatccgcggatttgccctggtggctcatgaggatgggattgctaac
atttctgaggacatgcctgtgggaactcccgtggctctggtggaagtgacagatcgggac
gagggtgaaaatgcagtggtgacttgtgtggtggcgggagatgtacctttccagcttcgt
tcagcatcagacacaagtcggaggaagtatttcctgcagacaacaacaccactggattac
gaacgggtcaaggaatacaggattgagattgtagctgttgattcagggaacccggctctt
tccagcaccaactctctaaaggtccaagtaacagatgtgaatgataacgctccggttttc
tccccgtcaatgtatgaggtggactttccagaggagaatcagccaggcgataaggttttg
gatgtagtagccaccgatgcagacagcggcaccaatgccgagctcacgtacaatattatc
ttagactcagccatcaagggcctctttgagatcaaccgtaacacaggagaggtcagagtg
atggaccagttagaccgtgaatacagagaacgctatgagtttcatgttgaggcatctgat
aagggggttcccagcatgaggggaactgcaacagttgtggttaatgtgctcgaccgcaat
gacaacgatcccaagttcatgctaaatggctacagtttctctgtcctggaaaacatgcct
ccactcagtcctgtgggaatggtgactgtcatggatgttgacaaaggtgaaaatgctcag
gttcacttatcagtggaaccagacaacggaaagtttgtgattcagaacggcacagggact
atcctctcgagaatttcctttgatcgggaaaaggaaagcacatacacgttccgtctaaaa
gctgttgatggaggtgatcctcctcgctcctcttatgtgggaattacaataaacgtccta
gatgaaaatgataatgcaccttatatcaccaaaccttccaactcctcgtacaagtttctt
ccaccactgacgagcccagatacgcgtgtggaaaaagtggaagcagaggacattgatacg
ggattgaatgcggagttagactacaccatcatgggtggaaaccctcatggacttttccgc
atttctccaacagatggtgagattacgcttgtcaaagaattcacccggaagcataatggt
ctccaccgtctggtcgtaaaagtcagtgacaagggaaaacctgccaagcacacgacagcg
ctggtccacatctttgtaaatgagacaatcggaaacgtcacattggtggaatcactggtc
ggccacagtctctacacacctctagaaagggacatcgctggagacccagaatacgcccgc
gtccagcagagcaacattgtgtatggaagccttgcagggattgccggggtcatcctggtc
attgtggtggtggttgttatccggcaccgtctgcagaaggaagccaagagtggataccaa
gcaggaaagaaagagtccaaagatctctacacacccaagcaaggaaccaaaagcagcaag
ggcaaaaagggtaagaagggcaagtctccaaaaccagcaaagtccttggaggaggatgag
gaggcaagtcttcagaaaggcttaaaattcaacctgatgagtgacaatgatagtcccagg
attcatctgcccctcaattaccctcccggaagccccgatttggggagacactaccggtca
aactcccctttgccctccattcagctgcagccacaatccccttcagcttccaaaaagcac
caggctgttcaggatcttccggctgcaaacaccttcgtagggactggagacagcaactcg
accggttctgatcagtattcggattacagctacaagaccaaccctcagaaatacagcacc
aaacagctgccgcaccgccgtgtgaccttctcaacagccaatcaggcacaggatctgcag
gactcctcccagcacagttactacgacagcggattggatgaatcagaaacaccgagcagt
aaaagttcttcagggccgaggatcggaccgctggcgctgcccgaggatcactacgagagg
acgactccagacggcagcatcggagagatcgaacaccccgagaacgatctgaggtcgctt
cccgacgtggcgatgacggggaactgtactcgtgagtgcagtgaattcggacactcagat
tcctgctggatgccgtcaccaaatcgcagcaacaaaatctccaagagtgcatcgaaactc
tccaccttcgtgccttaccaggagcgggagcctcaggagacactgatggccaacggaagc
cccaagcccatgggggaggaactcggtggcggggccaccaacaaaatgcccagcatccgc
ttcatggccccttacactagtgcctactccgcagctggcgagggggcgaaggagtgcagc
atggaggaaatcccgctgagtcaaacggcagcgaccacaccctccagccaggggtccaag
agagagatctacctgtga
DBGET
integrated database retrieval system
