Pangasianodon hypophthalmus (striped catfish): 113524464
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Entry
113524464 CDS
T05759
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113524464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113524464
03036 Chromosome and associated proteins [BR:
phyp03036
]
113524464
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113524464
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113524464
PBAF complex
113524464
GBAF(ncBAF) complex
113524464
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
113524464
NCBI-ProteinID:
XP_026766514
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
MAAQTAGCAAAGSAGDKAAGSSALSRKKDGAPCVDFWESAETVSQLDTIRTWIGKHYKKY
VQVDAPSSKSLSALVIQLQQFQEDVFGHKASDPGLTKLPVKCFLDMKPGGALCHILGSVY
KFKTEQGWRRFDLQNPSRVDRNIEMFVSVEKTLVQNNLLSRPVVYLSPELDQKQASKLKD
IIMRHKGSVTEDRLQATHQIYPTPTSVDEGVHVKWVLDTDTFNEWMNEEDYEVDDSKRSV
SYRRRIYPRDEEESKTSGKKRRRSPSPPTSESRKKGGKKGSYKRRGQQEEVEPEEDLTKD
MEDPTPVPNMEEVKLPKNVNLKKDSENTPVKGGTMADLDDQEDEFLSGVRDEEDQGREFG
RGLEGEESATEQTHHIIIPSYASWFDYNCIHRIERRALPEFFNGKNKSKSPEIYLAYRNF
MIDTYRLNPQEYLTSTSCRRNLTGDVCALMRVHAFLEQWGLINYQVDAESRPLPMGPPPT
PHFNVLTDIPTALVPLQHRPLQVSASQHMLHFPEKSREKPSDLQNFGLRTDIYAKKHPKT
KGANAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENS
EASMGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREQASPELL
NPPILKIQDPAQSLAELEPTFGMQSSNTSGPEADQLEKTDGTQLEKLEFDTEHHEKPMGE
NSAGEGERVKNEEKDETEEEKGEESKAGGEEEGLEVVQTQGEHGERRRRAELELVEANIA
TAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEA
LEQQRQQLLSERQNFHMEQVKYAELKARQQLEQQQGGASQSSGPAFNPLHHGRAVGSGAA
GQMMGSQHTGAPNGTYPTPPSSQSEGATPVSRPPMDS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagaccgcgggatgtgcagccgcaggctcggcgggggataaagcggccggc
agctcggcactgagtcggaagaaggacggggctccgtgtgtagacttctgggagagcgca
gagaccgtgtcacagctcgacacgattcgcacttggatcgggaagcactacaaaaagtat
gtgcaggttgatgctccttccagcaagtctctctcagcgctggtcatccagctccagcag
tttcaggaggatgtgtttggtcataaagcaagtgacccaggcctcactaaactgccggta
aagtgtttcttagacatgaagccaggaggtgctctctgtcacatccttggctctgtgtac
aagtttaaaacagagcagggctggcgtcgcttcgacctgcagaatccgtcccgcgtggac
cgcaatatagagatgttcgtcagtgtggagaaaacactggtacagaataatcttctgagc
aggcctgtggtgtacctgtcacctgagctggaccagaagcaggccagcaaactcaaagac
atcatcatgcgacacaagggttcggtcacggaggacaggttacaggccacccatcaaatt
taccctactcccacctcggtagatgaaggtgtgcatgttaagtgggttctcgacacagac
acattcaatgagtggatgaacgaggaagactatgaggtggatgacagcaaaaggagcgtg
agttaccggaggcgcatctaccccagagatgaggaggaaagcaagacttcggggaagaag
agaaggcgctccccctctccacccacatctgagtccaggaagaaaggagggaaaaagggt
tcgtataagaggcgtggccaacaggaagaggtggagccagaagaagacctgactaaagac
atggaggacccaacaccggtgcctaacatggaggaggtcaaactgcctaaaaatgtaaac
ctgaagaaagacagtgagaacacaccagtgaagggaggaaccatggctgacttggatgac
caggaagacgagttcctgtctggagtcagggatgaggaggatcagggacgggagttcggc
cgtgggctggaaggagaggagagtgccacagagcagactcaccatatcatcatacccagc
tatgcctcttggtttgactacaactgtattcatcggatagagaggagagcactgcccgag
ttcttcaacgggaagaacaagtccaaatccccagagatatatttggcatatcgtaacttc
atgattgacacgtatcggcttaaccctcaggagtacttgacctccacctcctgcagacgt
aaccttacaggagatgtgtgtgcccttatgagggtccatgcattcctggagcagtggggt
ctgataaattaccaggtggatgctgagagcagacctcttcctatgggccctccacctaca
cctcactttaatgttctcacagacattcccacagccctggtccctctacagcacagacca
ttacaggtttcagcctctcagcatatgctccatttcccagagaaaagcagagaaaagcct
tcagaccttcaaaactttggcctacgaaccgatatttacgcaaagaagcatcccaagact
aaaggagcaaacgcaggacgcgagtggacagaacaagaaactctgttgcttttggaggca
ttagagatgtataaagatgactggaataaggtctctgagcatgtgggtagccgcacacag
gatgagtgcatcctgcatttcctgcgcttgcccatagaggacccgtacttggagaactcg
gaagcttcaatgggccccctcgcctaccagcctgttccctttagccagtcgggaaaccca
gtcatgagcaccgtggctttcctcgcctccgttgtggaccccagagtggcctctgctgct
gccaaggcagccctggaggagttctctcgcgttcgagaacaagcttctccagagctgctc
aatccccccatcctcaaaatccaagatcctgcacagagtttagcagaacttgagcccacc
tttggaatgcagtcaagtaacacgtctggacccgaagcagaccagctagaaaagactgat
ggaacccaactggaaaagctggagtttgacacagaacaccatgaaaagccaatgggggaa
aacagtgcaggagagggagagcgagtaaagaatgaagaaaaagatgagactgaagaggag
aaaggagaggagagtaaagcaggtggtgaagaggaagggttggaagtggtccagacacaa
ggggaacatggggagagaaggaggagggcggaacttgaattggttgaagcaaatattgcc
acagcagctgcagctgccctggcctccgctgccaccaaggccaaacacttggctgctgtg
gaggaaaggaagattaagtctcttgtggcactgctggtagagactcagatgaagaagctg
gagataaagctgaggcactttgaggagctggaaaccatcatggaccgggagaaagaggct
ctggagcagcagcgacagcagttgctgtcagagaggcagaacttccacatggagcaggtg
aagtacgctgagctaaaggcacgccagcagctggaacagcagcagggaggagcctcgcag
agcagtgggcctgcgtttaaccctctacatcacggtcgtgcagtgggcagtggagcagcg
gggcagatgatgggctcgcagcacaccggtgctcctaatggcacatacccaactccacct
tcctcccagtctgaaggggccacgcctgtttctcggcccccgatggacagctga
DBGET
integrated database retrieval system
